Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   DKY63_RS15720 Genome accession   NZ_CP029693
Coordinates   3376708..3378297 (+) Length   529 a.a.
NCBI ID   WP_110964937.1    Uniprot ID   A0A2Z4RML0
Organism   Pseudomonas putida strain JBC17     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3371708..3383297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKY63_RS15700 (DKY63_15700) pgeF 3373488..3374213 (-) 726 WP_110964933.1 peptidoglycan editing factor PgeF -
  DKY63_RS15705 (DKY63_15705) rluD 3374210..3375172 (-) 963 WP_110964934.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DKY63_RS15710 (DKY63_15710) - 3375324..3376346 (+) 1023 WP_110964935.1 outer membrane protein assembly factor BamD -
  DKY63_RS15715 (DKY63_15715) - 3376485..3376718 (+) 234 WP_110964936.1 PP0621 family protein -
  DKY63_RS15720 (DKY63_15720) pilS 3376708..3378297 (+) 1590 WP_110964937.1 ATP-binding protein Regulator
  DKY63_RS15725 (DKY63_15725) pilR 3378300..3379631 (+) 1332 WP_110964938.1 sigma-54 dependent transcriptional regulator Regulator
  DKY63_RS15730 (DKY63_15730) thiO 3379733..3380833 (-) 1101 WP_110964939.1 glycine oxidase ThiO -
  DKY63_RS15735 (DKY63_15735) - 3380892..3381293 (-) 402 WP_110964940.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58512.24 Da        Isoelectric Point: 6.5456

>NTDB_id=295375 DKY63_RS15720 WP_110964937.1 3376708..3378297(+) (pilS) [Pseudomonas putida strain JBC17]
MVAEASSHGDKQAQRLLRLYHLYRLSVGIILVLLISSNMDNRLLTSANDELLRTGSWLYLVLNILLVVFFENTRHPAQLF
GLALLDVLLLCVLFYAGGGVASAIGNLLIVSVAISNTLLRRRIGLLIAAIGAIGIVSSSFLLSLSHPPSANDYLQVGTHG
ALCFAAALLVQGLIRRLEVSETLAEQKASEVVGLEALNALILQRMRTGILVLDDQRRVQLANHSARSLLGNGHLEGCQIE
EHFPALVERMDLWLSNPTLRPPSLKVAASGVELQPSFIALDPSPQHQTLVFLEDLAQIAQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLRESEELSSADQRLTQIIQDHSQRMNRVIENVLQLSRRQQTVPQRLDLKPWLDQFVTEISEGATER
QRIHLHIASGDFTTLMDPNQLNQILDNLIRNAWRHSAQDHDIAQVWLELFIDAESQLPILEILDDGPGVAPDHQAQLFEP
FFTTSHQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=295375 DKY63_RS15720 WP_110964937.1 3376708..3378297(+) (pilS) [Pseudomonas putida strain JBC17]
GTGGTCGCTGAGGCCTCCAGTCACGGCGACAAACAGGCCCAGCGACTGCTGCGCCTTTATCACCTCTACCGTTTAAGCGT
CGGCATCATTCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGGTTGCTGACGTCAGCCAACGACGAGCTGCTGCGAA
CTGGCAGCTGGTTGTACCTGGTGCTGAATATCCTGCTGGTGGTGTTCTTCGAGAACACCCGGCACCCCGCACAACTGTTC
GGCCTGGCGCTTTTGGATGTCTTGCTGCTCTGCGTCCTGTTCTACGCCGGCGGCGGCGTGGCCAGTGCCATTGGCAATCT
TTTGATCGTGTCGGTGGCCATCAGCAATACCTTGCTGCGAAGGCGTATCGGCCTGTTGATTGCCGCGATCGGTGCGATCG
GCATCGTGAGTTCAAGTTTTCTGCTGAGCCTCAGCCATCCACCCAGTGCGAATGACTATTTGCAGGTCGGCACCCATGGC
GCCCTGTGTTTTGCCGCCGCATTGCTGGTGCAAGGGCTGATCCGGCGCCTGGAGGTCAGTGAAACCCTGGCCGAGCAGAA
AGCCAGCGAAGTCGTCGGCCTGGAAGCGCTCAACGCACTGATCCTGCAACGCATGCGCACCGGGATTCTGGTGTTGGACG
ACCAGCGACGCGTGCAGTTGGCCAACCACAGCGCACGCTCACTACTCGGCAACGGCCATCTGGAAGGCTGCCAGATCGAG
GAGCATTTCCCCGCCCTGGTCGAGCGCATGGACCTGTGGCTGAGCAACCCGACGCTGCGCCCCCCGAGCCTGAAAGTCGC
CGCCAGTGGCGTGGAGCTTCAACCCAGCTTCATTGCTCTGGACCCGAGCCCCCAGCATCAGACCCTGGTTTTTCTCGAAG
ACCTCGCCCAGATAGCCCAACAGGCCCAGCAGCTGAAACTCGCCGCCCTGGGGCGCCTGACCGCCGGCATCTCCCACGAA
ATCCGCAACCCGCTGGGGGCAATCAGTCATGCCGCGCAGTTATTGCGAGAATCTGAGGAACTGAGCAGTGCCGATCAACG
TCTGACTCAGATTATTCAAGATCACTCTCAGCGAATGAATCGGGTTATTGAAAACGTCTTGCAACTGTCCCGCCGCCAGC
AAACCGTCCCGCAACGACTGGACCTGAAGCCGTGGCTGGATCAATTCGTCACTGAAATCAGCGAGGGCGCGACTGAGCGC
CAGCGCATTCATCTGCACATCGCGTCAGGGGACTTCACGACCCTGATGGACCCGAACCAGTTGAACCAGATTCTCGACAA
CCTGATACGCAATGCCTGGCGCCACAGCGCCCAGGACCACGATATCGCCCAGGTCTGGCTTGAGTTGTTCATCGATGCCG
AGAGCCAGTTGCCCATTCTCGAAATCCTCGACGATGGTCCCGGTGTCGCCCCCGACCATCAGGCGCAATTGTTCGAGCCT
TTCTTTACCACCAGTCATCAAGGCACTGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGTATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4RML0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.811

100

0.599

Multiple sequence alignment