Detailed information NTG0295338

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: EQH42_RS10295
• Genome accession: NZ_CP035238
• Coordinates: 2030359..2031456 (+)
• Length: 365 a.a.
• NCBI ID: WP_000266662.1
• Uniprot ID: Q8DMX3
• Organism: Streptococcus pneumoniae strain TVO_D39
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2025359..2036456

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EQH42_RS10270 (EQH42_10840)	pgsA	2025880..2026425 (-)	546	WP_000712132.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
EQH42_RS10275 (EQH42_10845)	rodZ	2026436..2027257 (-)	822	WP_001227958.1	cytoskeleton protein RodZ	-
EQH42_RS10280 (EQH42_10850)	yfmH	2027299..2028582 (-)	1284	WP_000170194.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
EQH42_RS10285 (EQH42_10855)	yfmF	2028579..2029829 (-)	1251	WP_000424263.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
EQH42_RS10290 (EQH42_10860)	yaaA	2029988..2030356 (+)	369	WP_000455903.1	S4 domain-containing protein YaaA	-
EQH42_RS10295 (EQH42_10865)	recF	2030359..2031456 (+)	1098	WP_000266662.1	DNA replication/repair protein RecF	Machinery gene
EQH42_RS10300 (EQH42_10870)	guaB	2031507..2032985 (-)	1479	WP_000073428.1	IMP dehydrogenase	-
EQH42_RS10305 (EQH42_10875)	trpS	2033137..2034162 (-)	1026	WP_000165444.1	tryptophan--tRNA ligase	-
EQH42_RS10310 (EQH42_10880)	-	2034368..2035990 (+)	1623	WP_000958770.1	ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 41916.00 Da
• Isoelectric Point: 9.0596

>NTDB_id=295338 EQH42_RS10295 WP_000266662.1 2030359..2031456(+) (recF) [Streptococcus pneumoniae strain TVO_D39]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSAQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKASVNGN

Nucleotide

• Length: 1098 bp

>NTDB_id=295338 EQH42_RS10295 WP_000266662.1 2030359..2031456(+) (recF) [Streptococcus pneumoniae strain TVO_D39]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTATTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGCTCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCTATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTTCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q8DMX3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	100	100	1
recF	Bacillus subtilis subsp. subtilis str. 168	45.902	100	0.46