Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   DMC16_RS15140 Genome accession   NZ_CP029686
Coordinates   2903145..2904386 (+) Length   413 a.a.
NCBI ID   WP_110344519.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei strain Lpc10     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2898145..2909386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMC16_RS15115 (DMC16_15110) tsf 2898629..2899510 (+) 882 WP_003565808.1 translation elongation factor Ts -
  DMC16_RS15120 (DMC16_15115) pyrH 2899746..2900465 (+) 720 WP_003565806.1 UMP kinase -
  DMC16_RS15125 (DMC16_15120) frr 2900465..2901022 (+) 558 WP_003565804.1 ribosome recycling factor -
  DMC16_RS15130 (DMC16_15125) - 2901552..2902304 (+) 753 WP_003570430.1 isoprenyl transferase -
  DMC16_RS15135 (DMC16_15130) - 2902340..2903128 (+) 789 WP_003565800.1 phosphatidate cytidylyltransferase -
  DMC16_RS15140 (DMC16_15135) eeP 2903145..2904386 (+) 1242 WP_110344519.1 RIP metalloprotease RseP Regulator
  DMC16_RS15145 (DMC16_15140) - 2904411..2906138 (+) 1728 WP_003565796.1 proline--tRNA ligase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45034.67 Da        Isoelectric Point: 8.6663

>NTDB_id=295319 DMC16_RS15140 WP_110344519.1 2903145..2904386(+) (eeP) [Lacticaseibacillus paracasei strain Lpc10]
MTTIIAFIVIFCILVVVHEFGHFYFAKRSGILVREFSIGMGPKLWASHKNNTTYTLRLLPLGGYVRMAGWQDEEDEIKPG
TMLSLILNDQGKVVRINASDKTTLAGGMPVQVSRVDLVKDLVIEGYPNGDETALQTLQVDHDATIIEEDGTEVQIAPEDV
QFQNAPVWRRLLVNFAGPMNNFLLAILAFIIYGLFFGVQVLNTNQIGTVVPGYPAAEAGLKSNATVQTIDGQKMSSFTDL
SKIVSKNAGKSVTFTVKENGKSKNIVIKPNKEGKIGVEAHVDKSPANAIPFGFSQTWNLAVRTWDVLKSMVTGGFSLNKL
AGPVGIYTMTSQSAKGGIQGLLFFMGYLSLGLGITNLLPIPVLDGGKILLNLIEIIRRKPLKPETEGVVTMIGLGLMVLL
MLAVTINDIMRYF

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=295319 DMC16_RS15140 WP_110344519.1 2903145..2904386(+) (eeP) [Lacticaseibacillus paracasei strain Lpc10]
ATGACCACTATCATCGCCTTTATCGTTATCTTCTGCATTCTTGTGGTAGTTCACGAGTTTGGCCATTTTTACTTTGCAAA
ACGCAGCGGCATTCTAGTCCGGGAATTTTCGATCGGTATGGGCCCGAAGCTATGGGCGTCGCACAAGAACAATACGACCT
ACACGCTGCGGTTGCTACCCCTTGGCGGATACGTCCGCATGGCTGGCTGGCAAGATGAGGAGGACGAGATTAAGCCCGGG
ACGATGCTGAGCCTGATTCTTAACGATCAAGGCAAGGTTGTCCGGATCAATGCCAGTGACAAAACGACTTTGGCCGGCGG
AATGCCGGTTCAAGTGAGTCGCGTCGATTTAGTTAAGGATCTGGTGATTGAAGGTTATCCAAACGGGGATGAAACAGCCT
TGCAAACTTTGCAGGTTGACCACGATGCGACGATCATTGAAGAAGACGGAACCGAGGTTCAGATCGCGCCAGAAGACGTT
CAGTTTCAAAACGCCCCGGTTTGGCGCCGGTTATTGGTCAACTTCGCCGGTCCGATGAATAACTTCTTACTCGCGATTCT
AGCTTTTATTATTTACGGTCTGTTTTTTGGTGTTCAGGTGCTCAATACCAACCAAATCGGAACAGTTGTGCCAGGTTATC
CAGCCGCAGAAGCTGGTCTTAAGTCCAATGCGACGGTGCAAACGATTGACGGTCAAAAAATGTCATCATTCACGGATCTT
TCAAAGATCGTCAGTAAAAATGCCGGTAAATCAGTGACATTTACCGTGAAGGAAAACGGTAAAAGCAAGAACATCGTGAT
CAAGCCGAATAAGGAAGGCAAGATCGGGGTTGAAGCACACGTCGATAAGTCCCCAGCAAATGCCATTCCTTTTGGCTTTT
CTCAAACTTGGAATTTGGCTGTCCGCACTTGGGACGTGCTCAAATCCATGGTGACCGGCGGTTTTTCACTCAATAAACTG
GCTGGCCCGGTTGGTATTTATACCATGACGAGTCAAAGTGCCAAAGGCGGTATTCAAGGATTACTCTTCTTTATGGGTTA
CTTGAGTCTCGGCTTAGGGATTACCAATTTATTGCCGATTCCAGTGCTTGATGGTGGTAAAATTCTTTTGAACCTGATCG
AAATTATTCGCCGTAAGCCATTAAAACCGGAAACGGAAGGCGTTGTGACCATGATTGGCTTGGGCCTGATGGTTCTATTA
ATGCTAGCGGTCACAATCAACGATATCATGCGCTACTTTTAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_6)

(206-257)

Peptidase family M50 (Peptidase_M50)

(6-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

49.292

100

0.506
  eeP Streptococcus thermophilus LMD-9

49.057

100

0.504

Multiple sequence alignment