Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EQH42_RS07445 Genome accession   NZ_CP035238
Coordinates   1501603..1502199 (-) Length   198 a.a.
NCBI ID   WP_000966743.1    Uniprot ID   P0CB76
Organism   Streptococcus pneumoniae strain TVO_D39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1496603..1507199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH42_RS07425 (EQH42_07870) - 1497534..1498238 (-) 705 WP_001055251.1 TIGR02206 family membrane protein -
  EQH42_RS07430 (EQH42_07875) - 1498329..1498940 (-) 612 WP_000857991.1 NUDIX hydrolase -
  EQH42_RS07435 (EQH42_07880) murF 1498927..1500300 (-) 1374 WP_000778688.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  EQH42_RS07440 (EQH42_07885) - 1500384..1501427 (-) 1044 WP_000814630.1 D-alanine--D-alanine ligase -
  EQH42_RS07445 (EQH42_07890) recR 1501603..1502199 (-) 597 WP_000966743.1 recombination mediator RecR Machinery gene
  EQH42_RS07450 (EQH42_07895) pbp2b 1502210..1504268 (-) 2059 Protein_1496 penicillin-binding protein 2B -
  EQH42_RS07455 (EQH42_07900) - 1504468..1505319 (+) 852 WP_000360334.1 MurR/RpiR family transcriptional regulator -
  EQH42_RS07460 (EQH42_07905) - 1505335..1506219 (-) 885 WP_000222983.1 ROK family protein -
  EQH42_RS07465 (EQH42_07910) - 1506237..1507154 (-) 918 Protein_1499 dihydrodipicolinate synthase family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21688.86 Da        Isoelectric Point: 4.5622

>NTDB_id=295294 EQH42_RS07445 WP_000966743.1 1501603..1502199(-) (recR) [Streptococcus pneumoniae strain TVO_D39]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSADDVNEFAKNLLSAKRELTYCSICGRLTDDDPCSICTDPTRDQT
TILVLEDSRDVAAMENIQEYHGLYHVLHGLISPMNGISPDDINLKSLMTRLMDSEVSEVIVATNATADGEATSMYLSRLL
KPAGIKVTRLARGLAVGADIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=295294 EQH42_RS07445 WP_000966743.1 1501603..1502199(-) (recR) [Streptococcus pneumoniae strain TVO_D39]
ATGCTTTATCCAACACCTATTGCCAAGTTGATTGACAGTTATTCTAAGTTACCAGGTATCGGGATTAAGACGGCTACGCG
TCTGGCCTTTTATACGATTGGGATGTCTGCTGATGATGTCAATGAATTTGCAAAAAATCTCCTTTCTGCTAAGAGAGAAT
TGACATATTGTTCTATTTGTGGACGTTTGACAGACGACGATCCTTGTTCTATCTGTACTGATCCGACTCGTGACCAGACA
ACAATTTTAGTTCTTGAGGATAGTAGAGATGTGGCAGCCATGGAAAATATCCAAGAATACCATGGACTCTATCATGTCCT
TCATGGCCTCATTTCTCCTATGAATGGTATCAGTCCGGACGATATCAATCTCAAGAGCCTTATGACTCGTCTTATGGATA
GTGAGGTTTCAGAAGTGATTGTGGCGACTAATGCTACAGCGGATGGTGAAGCGACTTCCATGTATCTTTCACGTTTGCTC
AAGCCGGCTGGTATCAAGGTTACGCGTCTAGCACGAGGTCTCGCTGTGGGAGCGGACATTGAGTATGCGGACGAAGTGAC
ACTCTTACGAGCCATTGAAAATCGGACAGAGTTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0CB76

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

100

100

1
  recR Bacillus subtilis subsp. subtilis str. 168

62.121

100

0.621
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485