Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   EQH44_RS02500 Genome accession   NZ_CP035236
Coordinates   498861..499910 (+) Length   349 a.a.
NCBI ID   WP_000653766.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1902282     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 493861..504910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH44_RS02470 (EQH44_02660) - 494741..495097 (+) 357 WP_000114421.1 hypothetical protein -
  EQH44_RS02475 (EQH44_02665) dnaJ 495499..496635 (+) 1137 WP_001066301.1 molecular chaperone DnaJ -
  EQH44_RS02480 (EQH44_02670) - 496957..497196 (-) 240 WP_001812223.1 hypothetical protein -
  EQH44_RS02485 (EQH44_02675) - 497358..497645 (-) 288 WP_000777760.1 hypothetical protein -
  EQH44_RS02490 (EQH44_02680) - 497655..498065 (-) 411 WP_001278301.1 HIT family protein -
  EQH44_RS02495 (EQH44_02685) pptA 498133..498864 (+) 732 WP_000889919.1 ABC transporter ATP-binding protein Regulator
  EQH44_RS02500 (EQH44_02690) pptB 498861..499910 (+) 1050 WP_000653766.1 ABC transporter permease Regulator
  EQH44_RS02505 (EQH44_02700) - 500078..500407 (-) 330 WP_000132572.1 hypothetical protein -
  EQH44_RS02510 (EQH44_02705) - 500683..501021 (+) 339 WP_000876675.1 LytTR family DNA-binding domain-containing protein -
  EQH44_RS02515 (EQH44_02710) comE/blpR 501026..501763 (+) 738 WP_001219120.1 LytTR family DNA-binding domain-containing protein Regulator
  EQH44_RS02520 (EQH44_02715) - 501777..503117 (+) 1341 WP_001017644.1 sensor histidine kinase -
  EQH44_RS02525 (EQH44_02720) blpC 503159..503314 (-) 156 WP_000358817.1 quorum-sensing system pheromone BlpC -
  EQH44_RS02530 (EQH44_02725) - 503371..504732 (-) 1362 WP_001069082.1 bacteriocin secretion accessory protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40517.59 Da        Isoelectric Point: 9.8750

>NTDB_id=295018 EQH44_RS02500 WP_000653766.1 498861..499910(+) (pptB) [Streptococcus pneumoniae strain TVO_1902282]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFCQKASKFFTETG
LDWDYLISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
VLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=295018 EQH44_RS02500 WP_000653766.1 498861..499910(+) (pptB) [Streptococcus pneumoniae strain TVO_1902282]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATCAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACCCTTTTCTTGCTGTTATTTGCGCCTTTATTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTTGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGA
CTGGACTGGGACTATCTTATTTCTCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTTAAGCGTCGTGCCTATCTGGACTTTATTTTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTCTTCGTCTTCTCTTACTTTCC
GTACTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTAGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.714

100

0.479

  pptB Streptococcus thermophilus LMD-9

46.857

100

0.47