Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   SPN23F_RS08435 Genome accession   NC_011900
Coordinates   1611822..1612418 (-) Length   198 a.a.
NCBI ID   WP_000966746.1    Uniprot ID   Q9R2M1
Organism   Streptococcus pneumoniae ATCC 700669     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1606822..1617418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPN23F_RS08415 (SPN23F16690) - 1607753..1608457 (-) 705 WP_001055251.1 TIGR02206 family membrane protein -
  SPN23F_RS08420 (SPN23F16700) - 1608548..1609159 (-) 612 WP_000994194.1 NUDIX hydrolase N-terminal domain-containing protein -
  SPN23F_RS08425 (SPN23F16710) - 1609146..1610519 (-) 1374 WP_000778689.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  SPN23F_RS08430 (SPN23F16720) - 1610603..1611646 (-) 1044 WP_000814694.1 D-alanine--D-alanine ligase -
  SPN23F_RS08435 (SPN23F16730) recR 1611822..1612418 (-) 597 WP_000966746.1 recombination mediator RecR Machinery gene
  SPN23F_RS08440 (SPN23F16740) pbp2b 1612429..1614486 (-) 2058 WP_078134415.1 penicillin-binding protein 2B -
  SPN23F_RS08445 (SPN23F16750) - 1614680..1615531 (+) 852 WP_000360349.1 MurR/RpiR family transcriptional regulator -
  SPN23F_RS08450 (SPN23F16760) - 1615547..1616431 (-) 885 WP_000222979.1 ROK family protein -
  SPN23F_RS08455 (SPN23F16770) - 1616449..1617366 (-) 918 WP_001281530.1 dihydrodipicolinate synthase family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21678.82 Da        Isoelectric Point: 4.5622

>NTDB_id=29494 SPN23F_RS08435 WP_000966746.1 1611822..1612418(-) (recR) [Streptococcus pneumoniae ATCC 700669]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSADDVNEFAKNLLSAKRELTYCSICGRLTDDDPCSICTDSTRDQT
TILVLEDSRDVAAMENIQEYHGLYHVLHGLISPMNGISPDDINLKSLMTRLMDSEVSEVIVATNATADGEATSMYLSRLL
KPAGIKVTRLARGLAVGADIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=29494 SPN23F_RS08435 WP_000966746.1 1611822..1612418(-) (recR) [Streptococcus pneumoniae ATCC 700669]
ATGCTTTATCCAACACCTATTGCCAAGTTGATTGACAGTTATTCTAAGTTACCAGGTATCGGGATTAAGACGGCTACGCG
TCTGGCCTTTTATACGATTGGGATGTCTGCTGATGATGTCAATGAATTTGCAAAAAATCTCCTTTCTGCTAAGAGAGAAT
TGACATATTGTTCTATTTGTGGACGTTTGACAGACGACGATCCTTGTTCTATCTGTACTGATTCGACTCGTGACCAGACA
ACAATTTTAGTTCTTGAGGATAGTAGAGATGTGGCAGCCATGGAAAATATCCAAGAATACCATGGACTCTATCATGTCCT
GCATGGCCTCATTTCTCCTATGAATGGTATCAGTCCGGACGATATCAATCTTAAGAGCCTTATGACTCGTCTTATGGATA
GTGAGGTTTCAGAAGTGATTGTGGCGACTAATGCTACAGCGGATGGTGAAGCGACCTCCATGTATCTTTCACGTTTGCTC
AAGCCGGCTGGTATCAAGGTTACGCGTCTAGCACGAGGTCTCGCTGTGGGAGCGGACATTGAGTATGCGGACGAAGTGAC
ACTCTTACGAGCGATTGAAAATCGGACAGAGTTGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-171)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9R2M1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

99.495

100

0.995
  recR Bacillus subtilis subsp. subtilis str. 168

62.121

100

0.621
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.718

98.485

0.48