Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   CSB84_RS10025 Genome accession   NZ_CP029663
Coordinates   1894451..1895437 (-) Length   328 a.a.
NCBI ID   WP_000959282.1    Uniprot ID   A0A7U7EXT8
Organism   Staphylococcus aureus strain AR_0228     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context


Location: 1889451..1900437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSB84_RS10000 (CSB84_1825) - 1889711..1890058 (-) 348 WP_001242103.1 hypothetical protein -
  CSB84_RS10005 (CSB84_1826) - 1890244..1890837 (+) 594 WP_000224619.1 CYTH domain-containing protein -
  CSB84_RS10010 (CSB84_1827) - 1890941..1891306 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  CSB84_RS10015 yjbH 1891329..1892135 (+) 807 Protein_1791 protease adaptor protein YjbH -
  CSB84_RS10020 (CSB84_1830) pepF 1892595..1894403 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  CSB84_RS10025 (CSB84_1831) coiA 1894451..1895437 (-) 987 WP_000959282.1 competence protein CoiA family protein Machinery gene
  CSB84_RS10030 (CSB84_1832) mecA 1895558..1896277 (-) 720 WP_001217728.1 adaptor protein MecA -
  CSB84_RS10035 (CSB84_1833) spxA 1896648..1897043 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  CSB84_RS10040 (CSB84_1834) trpS 1897337..1898326 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  CSB84_RS10045 (CSB84_1835) opp4C 1898368..1899249 (-) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  CSB84_RS10050 (CSB84_1836) opp4B 1899261..1900223 (-) 963 WP_000915997.1 oligopeptide ABC transporter permease -

Sequence


Protein


Download         Length: 328 a.a.        Molecular weight: 38878.55 Da        Isoelectric Point: 9.5714

>NTDB_id=294810 CSB84_RS10025 WP_000959282.1 1894451..1895437(-) (coiA) [Staphylococcus aureus strain AR_0228]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFHSLFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKIIELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVYNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=294810 CSB84_RS10025 WP_000959282.1 1894451..1895437(-) (coiA) [Staphylococcus aureus strain AR_0228]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCTGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCATAGTTTGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTATTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGTACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A7U7EXT8

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

100

100

1

  coiA Staphylococcus aureus MW2

97.561

100

0.976


Multiple sequence alignment