Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   CPHY_RS08720 Genome accession   NC_010001
Coordinates   2063482..2065323 (+) Length   613 a.a.
NCBI ID   WP_012199708.1    Uniprot ID   A9KRI0
Organism   Lachnoclostridium phytofermentans ISDg     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2058482..2070323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPHY_RS08700 (Cphy_1678) - 2058764..2059531 (+) 768 WP_041703388.1 hypothetical protein -
  CPHY_RS08705 (Cphy_1679) - 2059856..2060530 (+) 675 WP_012199705.1 response regulator transcription factor -
  CPHY_RS08710 (Cphy_1680) - 2060527..2061597 (+) 1071 WP_012199706.1 HAMP domain-containing sensor histidine kinase -
  CPHY_RS08715 (Cphy_1681) rcrP 2061728..2063485 (+) 1758 WP_012199707.1 ABC transporter ATP-binding protein Regulator
  CPHY_RS08720 (Cphy_1682) rcrQ 2063482..2065323 (+) 1842 WP_012199708.1 ABC transporter ATP-binding protein Regulator
  CPHY_RS08725 (Cphy_1683) - 2065548..2066213 (+) 666 WP_012199709.1 AraC family transcriptional regulator -
  CPHY_RS08730 (Cphy_1684) - 2066377..2067711 (-) 1335 WP_012199710.1 cysteine desulfurase -
  CPHY_RS08735 (Cphy_1685) - 2067701..2068645 (-) 945 WP_012199711.1 family 2A encapsulin nanocompartment shell protein -
  CPHY_RS08740 (Cphy_1686) - 2068969..2070039 (-) 1071 WP_049762471.1 beta-propeller fold lactonase family protein -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 67992.81 Da        Isoelectric Point: 6.5654

>NTDB_id=29473 CPHY_RS08720 WP_012199708.1 2063482..2065323(+) (rcrQ) [Lachnoclostridium phytofermentans ISDg]
MSHKEEYKLGQSNRRKQMGPPGPGMGGAGEKAKDFKTTWVKLLKYCKKYWAVMVIALSCVVMGTVLTLIGPDKLSELTDL
ITKGIVTGIDLDGVARIGWTLVIFYGLSFLLSLIQGVVMATITQNVSKQLRGDISAKINRLPMWFYNKTTTGDVLSRVTN
DVDTIGQSLNQSVGTLVSAITLLVGSLIMMLKTNVFMTITAIVATCIGFVLMMLIMGKSQKYFVRQQQHLGEINGHIEEI
YDGHTIVKAYNGEAKAREKFVYLNNELRESNFMSQCLSGLMMPLMSFIGNFGYVAVCVVGAVLVMNNTISFGVIVAFILY
VRYFTQPLSQLAQAAQSLQSAAAAGERVFEFLEAEEMEDELAKTRKLENVQGKVDFEHVNFGYEGSDKAIINDFSVSTKP
GQKVAIVGPTGAGKTTIVNLLMRFHEIQSGTIKIDNIPVHQLRREDVHEQFCMVLQDTWIFEGTVRENLVYSTENVSEQT
LEEACKAVGLHHFIRTLPHGYDTMLNDQLSLSAGQKQQLTIARAMIADRPMLILDEATSSVDTRTELIIQNAMDELMKGR
TSFIIAHRLSTIKNADLILVMKDGDIIESGNHNELMKQGGFYADLYNSQFDAA

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=29473 CPHY_RS08720 WP_012199708.1 2063482..2065323(+) (rcrQ) [Lachnoclostridium phytofermentans ISDg]
ATGAGCCATAAAGAAGAATATAAATTAGGGCAATCTAATCGTAGAAAACAAATGGGACCACCAGGACCAGGTATGGGCGG
CGCTGGTGAGAAAGCCAAAGACTTTAAAACAACATGGGTAAAGTTACTTAAGTATTGTAAAAAATATTGGGCAGTTATGG
TAATTGCGTTAAGTTGCGTAGTGATGGGTACTGTATTAACGTTAATTGGTCCTGACAAATTATCAGAACTTACTGATTTG
ATTACAAAGGGAATTGTTACTGGAATCGATTTAGATGGTGTTGCTAGAATTGGTTGGACATTGGTAATATTTTATGGACT
TAGTTTTCTGCTGTCATTAATACAAGGTGTGGTGATGGCTACGATTACACAAAATGTATCGAAACAGTTACGTGGAGATA
TTTCTGCTAAGATTAATCGTTTGCCGATGTGGTTTTATAATAAGACAACAACAGGAGATGTACTTTCTCGTGTGACGAAT
GACGTAGATACCATTGGGCAATCTCTAAATCAAAGTGTGGGGACATTAGTTTCTGCTATTACTTTATTAGTTGGATCTTT
GATTATGATGTTAAAGACAAATGTATTTATGACAATTACAGCGATTGTTGCAACTTGTATTGGATTTGTATTGATGATGC
TTATCATGGGAAAATCACAAAAATACTTTGTACGTCAGCAACAGCATCTAGGTGAAATCAATGGACATATTGAAGAAATT
TATGATGGGCATACCATTGTAAAAGCTTATAATGGTGAAGCCAAAGCACGAGAGAAATTTGTTTATTTAAATAATGAACT
TCGAGAAAGTAATTTTATGTCTCAATGTTTATCAGGGTTAATGATGCCTCTGATGTCGTTTATTGGTAACTTCGGTTATG
TCGCAGTTTGTGTAGTTGGTGCCGTTCTTGTAATGAATAACACGATTTCCTTTGGAGTAATCGTGGCTTTTATATTATAT
GTAAGATATTTTACACAACCATTAAGTCAGCTTGCACAAGCTGCCCAGTCTTTGCAATCGGCTGCAGCAGCAGGAGAACG
TGTGTTTGAATTCCTTGAAGCGGAAGAAATGGAAGATGAGTTGGCAAAGACAAGAAAGCTTGAAAATGTGCAAGGTAAGG
TTGATTTTGAACATGTAAATTTTGGCTATGAAGGTTCTGATAAAGCAATCATTAATGATTTCTCGGTTTCCACCAAGCCA
GGTCAAAAAGTTGCAATTGTTGGCCCAACTGGAGCAGGGAAAACTACCATTGTAAATCTTTTAATGCGTTTCCATGAAAT
ACAAAGTGGAACTATTAAGATTGATAATATTCCTGTTCATCAGTTACGACGTGAAGATGTTCATGAACAATTTTGCATGG
TACTTCAAGATACGTGGATTTTTGAAGGAACGGTCCGTGAAAATCTAGTATATAGTACAGAAAATGTTTCTGAGCAAACG
TTAGAAGAGGCATGTAAAGCAGTTGGCTTGCATCATTTTATACGTACGCTTCCACATGGATATGATACGATGTTAAATGA
TCAATTGAGTCTATCGGCAGGACAAAAACAGCAGCTTACAATAGCGAGAGCCATGATTGCAGACCGACCAATGTTAATTC
TTGATGAAGCTACAAGTTCTGTAGATACTCGTACTGAGTTAATCATTCAAAATGCTATGGATGAGTTAATGAAAGGACGT
ACTTCATTTATTATTGCTCATAGGCTATCAACTATTAAAAATGCGGATTTGATTCTTGTTATGAAAGATGGTGATATCAT
AGAGAGCGGAAACCATAACGAATTAATGAAACAAGGCGGATTCTATGCAGACCTATATAATAGTCAATTCGATGCGGCGT
AA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(54-328)

ABC transporter (ABC_tran)

(392-539)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A9KRI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.783

93.801

0.514

Multiple sequence alignment