Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   CPHY_RS08715 Genome accession   NC_010001
Coordinates   2061728..2063485 (+) Length   585 a.a.
NCBI ID   WP_012199707.1    Uniprot ID   A9KRH9
Organism   Lachnoclostridium phytofermentans ISDg     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2056728..2068485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPHY_RS08695 (Cphy_1677) - 2057338..2058771 (+) 1434 WP_012199703.1 HAMP domain-containing sensor histidine kinase -
  CPHY_RS08700 (Cphy_1678) - 2058764..2059531 (+) 768 WP_041703388.1 hypothetical protein -
  CPHY_RS08705 (Cphy_1679) - 2059856..2060530 (+) 675 WP_012199705.1 response regulator transcription factor -
  CPHY_RS08710 (Cphy_1680) - 2060527..2061597 (+) 1071 WP_012199706.1 HAMP domain-containing sensor histidine kinase -
  CPHY_RS08715 (Cphy_1681) rcrP 2061728..2063485 (+) 1758 WP_012199707.1 ABC transporter ATP-binding protein Regulator
  CPHY_RS08720 (Cphy_1682) rcrQ 2063482..2065323 (+) 1842 WP_012199708.1 ABC transporter ATP-binding protein Regulator
  CPHY_RS08725 (Cphy_1683) - 2065548..2066213 (+) 666 WP_012199709.1 AraC family transcriptional regulator -
  CPHY_RS08730 (Cphy_1684) - 2066377..2067711 (-) 1335 WP_012199710.1 cysteine desulfurase -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64645.71 Da        Isoelectric Point: 8.4221

>NTDB_id=29472 CPHY_RS08715 WP_012199707.1 2061728..2063485(+) (rcrP) [Lachnoclostridium phytofermentans ISDg]
MIKLFKNLTKKEWLFVGISFVFIIAQVWLDLKLPDYMSEITMLVQTEGSTMTEILTAGGKMLTCALGSLVGAVIVAVLAA
KVASNFGARLRGHLFDKVQSFTMEEINRFSTSSLITRSTNDITQVQMLVVMGLQAMIKAPILAVWAIMKINGKSWQWTLT
TTLAVLVLLVVVGCCVILAMPKFKKLQKLTDDLNRVTRENLTGLRVVRAYNAEEYQGRKFEKANTELTGSNLFANRVMAM
MLPSIQLVMSGLSLAIYWVGAILIQEASMMDKMTLFSDMIVFSSYAMQVVMAFMMLIMIFIMLPRASVSAKRILEVLDTK
PTIVDGQIMSSKTRCKGEVEFKNVSFKYPDAEDYVIRNVSFTAKKGETVAFIGSTGCGKSTVVNLIPRFYDVTEGEVLVD
GINVKEYSQYALRNKIGYVSQKATLFGGTIKSNVAFGDNGKDGYLATDIIEAVSTAQAAEFVEAKEESYDSFVAQGGANL
SGGQKQRVSIARAICRHPEIFIFDDSFSALDYKTDRKLRDALKLECADATKLVVAQRIGTVRDADKIVVLDEGGIVGIGT
HEQLMKTCEVYQQIAYSQLSKEELA

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=29472 CPHY_RS08715 WP_012199707.1 2061728..2063485(+) (rcrP) [Lachnoclostridium phytofermentans ISDg]
ATGATTAAATTATTTAAAAATTTAACTAAAAAAGAATGGCTATTTGTGGGTATCAGCTTTGTGTTTATTATAGCACAGGT
ATGGTTGGACCTAAAATTACCAGATTATATGAGTGAAATTACAATGTTGGTGCAGACCGAAGGTAGCACAATGACTGAAA
TCTTAACTGCGGGAGGAAAGATGTTAACATGTGCACTAGGAAGTCTTGTTGGTGCTGTCATTGTTGCTGTACTAGCCGCA
AAAGTTGCTTCCAACTTCGGTGCCAGACTAAGAGGTCATCTATTTGATAAGGTGCAGTCCTTTACGATGGAAGAAATCAA
TAGATTTTCCACATCAAGTTTGATTACAAGGTCCACCAACGATATTACACAAGTGCAAATGCTTGTTGTAATGGGCTTAC
AAGCTATGATTAAAGCACCTATTCTAGCAGTATGGGCAATTATGAAAATTAACGGTAAGAGTTGGCAATGGACATTGACA
ACAACACTTGCGGTATTGGTCCTATTAGTAGTTGTTGGTTGTTGTGTAATTTTAGCAATGCCTAAGTTTAAGAAGCTTCA
AAAATTAACGGATGATCTAAACCGAGTAACGAGAGAGAACCTTACTGGTCTTCGGGTTGTTCGCGCATATAATGCAGAAG
AATATCAAGGTCGTAAATTTGAAAAAGCAAATACAGAATTAACTGGATCCAATTTATTTGCTAACCGTGTAATGGCTATG
ATGCTACCAAGTATTCAATTAGTAATGAGTGGTTTATCCTTAGCAATTTATTGGGTGGGAGCGATTCTAATTCAAGAAGC
TAGTATGATGGATAAAATGACGTTATTTTCAGATATGATAGTTTTCTCCTCTTATGCAATGCAAGTGGTTATGGCATTTA
TGATGCTAATTATGATTTTTATAATGTTACCTCGTGCTTCCGTTTCTGCAAAACGTATTCTAGAAGTATTAGATACAAAA
CCAACTATTGTAGATGGACAGATTATGTCTTCAAAAACAAGATGCAAAGGTGAAGTGGAATTCAAAAATGTAAGTTTTAA
GTATCCAGATGCCGAGGATTATGTAATACGTAATGTAAGTTTCACTGCAAAAAAGGGAGAAACGGTAGCATTTATCGGTT
CCACTGGATGTGGTAAAAGTACGGTAGTGAATTTAATACCACGTTTTTATGATGTAACAGAAGGGGAAGTTTTAGTAGAC
GGAATTAATGTGAAAGAATATAGCCAATACGCACTTCGTAATAAAATCGGGTATGTATCCCAAAAAGCAACGTTATTTGG
AGGAACTATCAAATCCAATGTTGCCTTTGGAGATAATGGGAAGGATGGATATCTTGCTACTGATATTATAGAGGCAGTTA
GTACTGCCCAAGCAGCTGAATTTGTAGAAGCAAAAGAAGAAAGCTATGATAGCTTTGTAGCGCAAGGTGGTGCCAACTTA
TCTGGTGGACAAAAACAAAGAGTATCTATTGCCCGAGCGATTTGTAGACATCCAGAAATATTTATTTTTGATGATTCCTT
CTCAGCGCTAGATTATAAGACAGACCGTAAATTACGTGATGCATTAAAACTTGAGTGCGCAGATGCTACCAAACTGGTCG
TAGCACAACGTATTGGAACCGTTCGTGATGCAGACAAAATTGTAGTACTAGATGAAGGGGGAATAGTGGGAATTGGTACA
CATGAACAATTAATGAAAACATGTGAAGTTTATCAACAAATTGCGTACTCACAATTATCGAAGGAGGAGTTAGCATGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-293)

ABC transporter (ABC_tran)

(357-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A9KRH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

53.188

100

0.542

Multiple sequence alignment