Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   CSC52_RS07550 Genome accession   NZ_CP029658
Coordinates   1386232..1386678 (+) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AR_0467     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1381232..1391678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC52_RS07515 (CSC52_1403) - 1381726..1381929 (+) 204 WP_000087561.1 YqgQ family protein -
  CSC52_RS07520 (CSC52_1404) - 1381926..1382912 (+) 987 WP_000161311.1 ROK family glucokinase -
  CSC52_RS07525 (CSC52_1405) - 1382912..1383241 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  CSC52_RS07530 (CSC52_1406) - 1383238..1383861 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  CSC52_RS07535 (CSC52_1407) comGA 1383913..1384887 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  CSC52_RS07540 (CSC52_1408) comGB 1384859..1385929 (+) 1071 WP_107388463.1 competence type IV pilus assembly protein ComGB Machinery gene
  CSC52_RS07545 (CSC52_1409) comGC 1385943..1386254 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  CSC52_RS07550 (CSC52_1410) comGD 1386232..1386678 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  CSC52_RS07555 (CSC52_1411) comGE 1386665..1386964 (+) 300 WP_000844410.1 hypothetical protein Machinery gene
  CSC52_RS07560 (CSC52_1412) comGF 1386882..1387379 (+) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  CSC52_RS07565 - 1387476..1387622 (+) 147 WP_001792109.1 hypothetical protein -
  CSC52_RS07570 (CSC52_1413) - 1387612..1388136 (+) 525 WP_110184196.1 shikimate kinase -
  CSC52_RS07575 (CSC52_1414) gcvT 1388295..1389386 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  CSC52_RS07580 (CSC52_1415) gcvPA 1389406..1390752 (+) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=294726 CSC52_RS07550 WP_001788899.1 1386232..1386678(+) (comGD) [Staphylococcus aureus strain AR_0467]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=294726 CSC52_RS07550 WP_001788899.1 1386232..1386678(+) (comGD) [Staphylococcus aureus strain AR_0467]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1

Multiple sequence alignment