Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   EQZ01_RS05610 Genome accession   NZ_CP035231
Coordinates   1048860..1049507 (+) Length   215 a.a.
NCBI ID   WP_085186395.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103571     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1043860..1054507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQZ01_RS05595 (EQZ01_05595) glpD 1044031..1045698 (+) 1668 WP_128737683.1 glycerol-3-phosphate dehydrogenase -
  EQZ01_RS05600 (EQZ01_05600) pgcA 1045830..1047575 (+) 1746 WP_128737684.1 phosphoglucomutase -
  EQZ01_RS05605 (EQZ01_05605) yhcY 1047724..1048863 (+) 1140 WP_085186397.1 two-component system sensor histidine kinase YhcY -
  EQZ01_RS05610 (EQZ01_05610) vraR 1048860..1049507 (+) 648 WP_085186395.1 two-component system response regulator YhcZ Regulator
  EQZ01_RS05615 (EQZ01_05615) yhdA 1049504..1050028 (+) 525 WP_128737685.1 FMN-dependent NADPH-azoreductase -
  EQZ01_RS05620 (EQZ01_05620) yhdB 1050043..1050285 (-) 243 WP_003233373.1 YhdB family protein -
  EQZ01_RS05625 (EQZ01_05625) yhdC 1050486..1050809 (+) 324 WP_014476269.1 YqzG/YhdC family protein -
  EQZ01_RS05630 (EQZ01_05630) lytF 1050851..1052317 (-) 1467 WP_128737686.1 peptidoglycan endopeptidase LytF -
  EQZ01_RS05635 (EQZ01_05635) nsrR 1052469..1052909 (-) 441 WP_014479293.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24175.86 Da        Isoelectric Point: 6.3034

>NTDB_id=294641 EQZ01_RS05610 WP_085186395.1 1048860..1049507(+) (vraR) [Bacillus subtilis strain SRCM103571]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGLEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPDTNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHAGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEILK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=294641 EQZ01_RS05610 WP_085186395.1 1048860..1049507(+) (vraR) [Bacillus subtilis strain SRCM103571]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTTGTCGGAGAAGCTGCAACTGGATTAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGATACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGCTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTGA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACAAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCGAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGATCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAACCTGAATGGAGAGATCT
TAAAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-114)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.209

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

37.611

100

0.395

Multiple sequence alignment