Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   EQY74_RS16510 Genome accession   NZ_CP035228
Coordinates   3098405..3100177 (-) Length   590 a.a.
NCBI ID   WP_128739475.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SRCM103529     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3093405..3105177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQY74_RS16485 (EQY74_16485) sdhA 3093587..3095350 (-) 1764 WP_003184180.1 succinate dehydrogenase flavoprotein subunit -
  EQY74_RS16490 (EQY74_16490) - 3095384..3095992 (-) 609 WP_003184182.1 succinate dehydrogenase cytochrome b558 subunit -
  EQY74_RS16495 (EQY74_16495) - 3096294..3096737 (+) 444 WP_003184184.1 YslB family protein -
  EQY74_RS16500 (EQY74_16500) - 3096782..3098011 (-) 1230 WP_011198177.1 aspartate kinase -
  EQY74_RS16510 (EQY74_16510) uvrC 3098405..3100177 (-) 1773 WP_128739475.1 excinuclease ABC subunit UvrC Machinery gene
  EQY74_RS16515 (EQY74_16515) trxA 3100320..3100634 (-) 315 WP_003184189.1 thioredoxin -
  EQY74_RS16520 (EQY74_16520) - 3100847..3101824 (-) 978 WP_009329334.1 electron transfer flavoprotein subunit alpha/FixB family protein -
  EQY74_RS16525 (EQY74_16525) - 3101874..3102647 (-) 774 WP_003184191.1 electron transfer flavoprotein subunit beta/FixA family protein -
  EQY74_RS16530 (EQY74_16530) - 3102679..3103455 (-) 777 WP_009329335.1 enoyl-CoA hydratase -
  EQY74_RS16535 (EQY74_16535) - 3103458..3104060 (-) 603 WP_003184196.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 68412.40 Da        Isoelectric Point: 9.4622

>NTDB_id=294419 EQY74_RS16510 WP_128739475.1 3098405..3100177(-) (uvrC) [Bacillus licheniformis strain SRCM103529]
MNKKIKEKLALLPDQPGCYLMKDRQDTVIYVGKAKILKNRVRSYFSGSHDAKTQRLVSEIEDFEYIVTSSNIEALILEMN
LIKKYDPKYNVMLKDDKSYPFIKITNERHPKLVVTRKVKKDKGRYFGPYPNVQAARETKKLLDRLYPLRKCAKLPDRVCL
YYHLGQCLAPCVYDVSEETNRQLTEEITRFLKGGYNEVKKELEAKMLEASENLQFERAKEFRDQIAHIESTMEKQKMMLN
DMVDRDVFAYSYDKGWMCVQVFFIRQGKLIEREVSMFPLYREADEEFLTFIGQFYSKNNHFLPKEILVPDSVDKDMIEEL
LDVNVRQPKRGAKKDLLLLAHKNAKLALKEKFSLIERDEERTIGAIEKLGKALDIYTPYRIEAFDNSNIQGTDPVSAMVV
FLDGKPHKKEYRKYKIKTVEGPDDYGSMREVIRRRYTRVLKENLPLPDLILIDGGKGQVSAALDVLENELGLDVPVAGLV
KDDKHRTSNLLIGDPLEIVQLERNSQEFYLLQRIQDEVHRFAISFHRQLRGKSAFQSVLDGIPGVGEQRKKLLLKHFGSV
KKMKEASAEDIRKLGIPLKTAQLIEEALKK

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=294419 EQY74_RS16510 WP_128739475.1 3098405..3100177(-) (uvrC) [Bacillus licheniformis strain SRCM103529]
ATGAACAAAAAAATCAAAGAAAAGCTGGCCCTTCTTCCGGATCAGCCTGGCTGCTACTTGATGAAAGACAGGCAGGATAC
CGTCATCTACGTCGGGAAAGCGAAAATCTTAAAAAACAGGGTCCGCTCCTATTTCAGCGGGTCCCATGATGCCAAAACAC
AGCGTCTTGTCAGTGAAATTGAAGACTTCGAATACATTGTCACATCCTCGAACATCGAAGCGCTCATTCTTGAAATGAAT
TTAATCAAAAAGTACGACCCGAAATATAACGTGATGCTTAAAGATGATAAAAGCTACCCGTTCATTAAAATCACGAACGA
GCGGCATCCGAAGCTGGTTGTCACAAGGAAGGTCAAAAAAGACAAAGGCCGCTATTTCGGGCCGTACCCCAATGTCCAGG
CTGCGAGGGAAACAAAAAAGCTGCTGGACCGCCTCTATCCGCTCAGAAAGTGCGCCAAGCTGCCTGACCGCGTCTGTTTG
TACTATCATCTCGGACAATGTCTGGCGCCATGCGTATATGATGTGTCTGAGGAGACAAACAGACAGCTCACAGAAGAAAT
TACCCGCTTTTTAAAAGGCGGCTACAATGAAGTGAAGAAAGAGCTTGAAGCAAAAATGCTCGAAGCCTCGGAAAACCTGC
AGTTTGAACGGGCGAAAGAATTCCGCGATCAAATTGCCCATATCGAGTCAACGATGGAAAAACAGAAAATGATGCTGAAT
GACATGGTTGACCGCGATGTATTTGCCTATTCGTATGACAAGGGCTGGATGTGCGTCCAGGTCTTCTTCATCAGGCAGGG
CAAATTGATTGAAAGAGAAGTCAGCATGTTTCCTTTATACAGGGAAGCAGACGAGGAATTTCTGACATTCATCGGGCAAT
TTTACTCCAAAAACAACCATTTTCTTCCGAAGGAAATTTTGGTGCCTGACAGCGTCGACAAGGACATGATTGAGGAGCTT
TTGGACGTGAACGTGCGCCAGCCGAAAAGAGGAGCGAAAAAAGACCTGCTGCTCCTTGCCCATAAAAATGCAAAGCTCGC
TTTGAAGGAGAAGTTTTCGCTCATTGAACGGGATGAAGAGCGGACGATCGGCGCGATTGAAAAGCTCGGAAAAGCGCTGG
ACATCTACACGCCATACAGAATTGAAGCGTTTGATAACTCAAATATTCAAGGAACGGACCCTGTTTCGGCCATGGTTGTA
TTTCTCGATGGAAAACCGCATAAAAAAGAGTACCGCAAATATAAGATCAAGACGGTTGAAGGTCCTGACGACTACGGATC
AATGCGCGAAGTCATCAGAAGAAGATATACAAGGGTGCTGAAAGAGAATCTGCCGCTGCCTGATTTAATTTTGATCGACG
GCGGAAAGGGGCAGGTGTCTGCCGCCCTTGACGTTCTGGAAAATGAACTGGGTCTCGATGTCCCTGTTGCCGGTCTGGTG
AAAGACGATAAGCACAGAACATCCAACCTTTTGATCGGCGATCCCCTTGAGATCGTCCAGCTTGAGCGGAACAGCCAGGA
ATTTTACCTGCTTCAGCGCATTCAGGACGAAGTGCACAGGTTTGCGATCAGCTTCCACAGGCAGCTCAGGGGAAAAAGCG
CATTTCAATCGGTGCTGGACGGCATACCGGGCGTCGGCGAACAGCGGAAAAAACTGCTGTTAAAACATTTCGGTTCCGTT
AAGAAAATGAAGGAAGCGAGCGCCGAAGATATCCGCAAGCTCGGCATACCTCTGAAAACGGCGCAGCTGATCGAAGAGGC
ATTGAAAAAATAA

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(16-90)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(377-523)

UvrB/uvrC motif (UVR)

(197-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

60.204

99.661

0.6
  uvrC Streptococcus pneumoniae R6

59.864

99.661

0.597
  uvrC Streptococcus pneumoniae D39

59.864

99.661

0.597