Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   DLJ56_RS11480 Genome accession   NZ_CP029629
Coordinates   2219588..2220157 (-) Length   189 a.a.
NCBI ID   WP_070001961.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MOK063     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2214588..2225157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLJ56_RS11435 (DLJ56_11435) - 2215062..2215670 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  DLJ56_RS11440 (DLJ56_11440) rplL 2215845..2216213 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  DLJ56_RS11445 (DLJ56_11445) rplJ 2216256..2216756 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  DLJ56_RS11455 (DLJ56_11455) rplA 2217028..2217720 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  DLJ56_RS11460 (DLJ56_11460) rplK 2217928..2218350 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  DLJ56_RS11465 (DLJ56_11465) nusG 2218531..2219079 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  DLJ56_RS11470 (DLJ56_11470) secE 2219092..2219274 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  DLJ56_RS11475 (DLJ56_11475) rpmG 2219330..2219473 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  DLJ56_RS11480 (DLJ56_11480) sigH 2219588..2220157 (-) 570 WP_070001961.1 sigma-70 family RNA polymerase sigma factor Regulator
  DLJ56_RS11485 (DLJ56_11485) - 2220238..2220762 (-) 525 WP_000664738.1 NYN domain-containing protein -
  DLJ56_RS11490 (DLJ56_11490) rlmB 2220762..2221508 (-) 747 WP_000390333.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  DLJ56_RS11495 (DLJ56_11495) - 2221516..2221920 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  DLJ56_RS11500 (DLJ56_11500) cysS 2221913..2223313 (-) 1401 WP_000631974.1 cysteine--tRNA ligase -
  DLJ56_RS11505 (DLJ56_11505) cysE 2223297..2223944 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22990.92 Da        Isoelectric Point: 9.4052

>NTDB_id=294409 DLJ56_RS11480 WP_070001961.1 2219588..2220157(-) (sigH) [Staphylococcus aureus strain MOK063]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCKQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=294409 DLJ56_RS11480 WP_070001961.1 2219588..2220157(-) (sigH) [Staphylococcus aureus strain MOK063]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTAAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

97.884

100

0.979
  sigH Staphylococcus aureus MW2

97.884

100

0.979

Multiple sequence alignment