Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DLJ55_RS08865 Genome accession   NZ_CP029627
Coordinates   1716028..1716714 (-) Length   228 a.a.
NCBI ID   WP_072353822.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MOK042     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1711028..1721714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLJ55_RS08845 (DLJ55_08845) rpsT 1711942..1712193 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  DLJ55_RS08850 (DLJ55_08850) holA 1712238..1713212 (-) 975 WP_001282562.1 DNA polymerase III subunit delta -
  DLJ55_RS08855 (DLJ55_08855) comEC 1713269..1715470 (-) 2202 WP_174190228.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DLJ55_RS08860 (DLJ55_08860) - 1715475..1715936 (-) 462 WP_000439693.1 ComE operon protein 2 -
  DLJ55_RS08865 (DLJ55_08865) comEA 1716028..1716714 (-) 687 WP_072353822.1 ComEA family DNA-binding protein Machinery gene
  DLJ55_RS08870 (DLJ55_08870) - 1716754..1717470 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  DLJ55_RS08875 (DLJ55_08875) rsfS 1717473..1717826 (-) 354 WP_001088020.1 ribosome silencing factor -
  DLJ55_RS08880 (DLJ55_08880) yqeK 1717827..1718411 (-) 585 WP_001019320.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  DLJ55_RS08885 (DLJ55_08885) nadD 1718401..1718970 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  DLJ55_RS08890 (DLJ55_08890) yhbY 1718973..1719263 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  DLJ55_RS08895 (DLJ55_08895) aroE 1719267..1720073 (-) 807 WP_000666748.1 shikimate dehydrogenase -
  DLJ55_RS08900 (DLJ55_08900) yqeH 1720087..1721187 (-) 1101 WP_001280136.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25773.50 Da        Isoelectric Point: 9.6753

>NTDB_id=294357 DLJ55_RS08865 WP_072353822.1 1716028..1716714(-) (comEA) [Staphylococcus aureus strain MOK042]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=294357 DLJ55_RS08865 WP_072353822.1 1716028..1716714(-) (comEA) [Staphylococcus aureus strain MOK042]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

99.561

100

0.996
  comEA Staphylococcus aureus N315

97.807

100

0.978

Multiple sequence alignment