Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | C0060_RS06130 | Genome accession | NZ_CP029614 |
| Coordinates | 1307245..1307763 (-) | Length | 172 a.a. |
| NCBI ID | WP_004896330.1 | Uniprot ID | A0A1Y4ICE7 |
| Organism | Lactobacillus johnsonii strain Byun-jo-01 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1302245..1312763
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C0060_RS06110 (LJ1_01234) | rplI | 1303380..1303835 (-) | 456 | WP_003651632.1 | 50S ribosomal protein L9 | - |
| C0060_RS06115 (LJ1_01235) | - | 1303847..1305865 (-) | 2019 | WP_004898294.1 | DHH family phosphoesterase | - |
| C0060_RS06120 (LJ1_01236) | - | 1305973..1306890 (-) | 918 | WP_011161252.1 | magnesium transporter CorA family protein | - |
| C0060_RS06125 (LJ1_01237) | rpsR | 1306984..1307220 (-) | 237 | WP_003649728.1 | 30S ribosomal protein S18 | - |
| C0060_RS06130 (LJ1_01238) | ssb | 1307245..1307763 (-) | 519 | WP_004896330.1 | single-stranded DNA-binding protein | Machinery gene |
| C0060_RS06135 (LJ1_01239) | rpsF | 1307797..1308093 (-) | 297 | WP_004896331.1 | 30S ribosomal protein S6 | - |
| C0060_RS06140 (LJ1_01240) | gyrA | 1308280..1310769 (-) | 2490 | WP_004898285.1 | DNA gyrase subunit A | - |
| C0060_RS06145 (LJ1_01241) | gyrB | 1310780..1312747 (-) | 1968 | WP_086874536.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 18600.32 Da Isoelectric Point: 4.7531
>NTDB_id=294283 C0060_RS06130 WP_004896330.1 1307245..1307763(-) (ssb) [Lactobacillus johnsonii strain Byun-jo-01]
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFINCVIWRKAAENFANFTSKGSLVGIQGRIQTR
TYDDKDGKRVYVTEVIVDNFSLLESRRDRENRQTNGGNFAPQGGNAPSTNNFGGSSAPSMNNAPASGESNKPQDPFADSG
STIDISDDDLPF
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFINCVIWRKAAENFANFTSKGSLVGIQGRIQTR
TYDDKDGKRVYVTEVIVDNFSLLESRRDRENRQTNGGNFAPQGGNAPSTNNFGGSSAPSMNNAPASGESNKPQDPFADSG
STIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=294283 C0060_RS06130 WP_004896330.1 1307245..1307763(-) (ssb) [Lactobacillus johnsonii strain Byun-jo-01]
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACAACCGGGAGTGGAATCTCAGTTGC
TACGTTTACTCTAGCTGTTGACCGTCAATATACCAATAGTCAAGGTGAACGTGGTGCTGATTTCATCAACTGTGTAATTT
GGCGTAAAGCAGCAGAAAATTTTGCTAACTTTACTTCAAAGGGTTCATTAGTTGGTATTCAAGGCCGGATTCAAACTAGA
ACGTACGATGATAAGGACGGTAAGAGAGTATACGTGACTGAAGTCATTGTTGATAATTTCTCTTTACTAGAATCACGTCG
TGATCGTGAGAATCGTCAGACTAATGGTGGCAATTTTGCTCCCCAAGGAGGAAATGCTCCAAGTACCAATAATTTTGGTG
GATCAAGTGCACCAAGCATGAATAATGCTCCTGCTAGTGGAGAAAGCAATAAACCGCAAGATCCATTTGCAGATTCCGGT
AGCACAATTGACATCTCAGATGATGATCTCCCATTTTAA
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACAACCGGGAGTGGAATCTCAGTTGC
TACGTTTACTCTAGCTGTTGACCGTCAATATACCAATAGTCAAGGTGAACGTGGTGCTGATTTCATCAACTGTGTAATTT
GGCGTAAAGCAGCAGAAAATTTTGCTAACTTTACTTCAAAGGGTTCATTAGTTGGTATTCAAGGCCGGATTCAAACTAGA
ACGTACGATGATAAGGACGGTAAGAGAGTATACGTGACTGAAGTCATTGTTGATAATTTCTCTTTACTAGAATCACGTCG
TGATCGTGAGAATCGTCAGACTAATGGTGGCAATTTTGCTCCCCAAGGAGGAAATGCTCCAAGTACCAATAATTTTGGTG
GATCAAGTGCACCAAGCATGAATAATGCTCCTGCTAGTGGAGAAAGCAATAAACCGCAAGATCCATTTGCAGATTCCGGT
AGCACAATTGACATCTCAGATGATGATCTCCCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
62.069 |
100 |
0.628 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.568 |
100 |
0.517 |