Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   EQW70_RS09520 Genome accession   NZ_CP035226
Coordinates   1800845..1801276 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain SRCM103517     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1795845..1806276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQW70_RS09500 (EQW70_09500) spoVS 1796407..1796667 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  EQW70_RS09505 (EQW70_09505) tdh 1796932..1797975 (+) 1044 WP_049140039.1 L-threonine 3-dehydrogenase -
  EQW70_RS09510 (EQW70_09510) kbl 1797988..1799166 (+) 1179 WP_128740334.1 glycine C-acetyltransferase -
  EQW70_RS09515 (EQW70_09515) miaB 1799314..1800843 (+) 1530 WP_014664026.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  EQW70_RS09520 (EQW70_09520) ymcA 1800845..1801276 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  EQW70_RS09525 (EQW70_09525) cotE 1801538..1802083 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  EQW70_RS09530 (EQW70_09530) hexA 1802216..1804792 (+) 2577 WP_070548989.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=294232 EQW70_RS09520 WP_003231834.1 1800845..1801276(+) (ymcA) [Bacillus subtilis strain SRCM103517]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=294232 EQW70_RS09520 WP_003231834.1 1800845..1801276(+) (ymcA) [Bacillus subtilis strain SRCM103517]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTATTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGTTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1