Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   EQJ84_RS20275 Genome accession   NZ_CP035191
Coordinates   3926839..3927528 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis strain SRCM104011     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3921839..3932528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQJ84_RS20255 (EQJ84_20255) yxeA 3922744..3923091 (-) 348 WP_021481023.1 YxeA family protein -
  EQJ84_RS20260 (EQJ84_20260) yxdM 3923105..3924973 (-) 1869 WP_128442014.1 ABC transporter permease YxdM -
  EQJ84_RS20265 (EQJ84_20265) yxdL 3924948..3925721 (-) 774 WP_003243557.1 ABC transporter ATP-binding protein YxdL -
  EQJ84_RS20270 (EQJ84_20270) yxdK 3925865..3926842 (-) 978 WP_024572300.1 two-component system sensor histidine kinase YxdK -
  EQJ84_RS20275 (EQJ84_20275) braR 3926839..3927528 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  EQJ84_RS20280 (EQJ84_20280) iolJ 3927636..3928508 (-) 873 WP_014478478.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  EQJ84_RS20285 (EQJ84_20285) iolI 3928529..3929365 (-) 837 WP_128442016.1 2-keto-myo-inositol isomerase -
  EQJ84_RS20290 (EQJ84_20290) iolH 3929451..3930320 (-) 870 WP_128442017.1 sugar phosphate isomerase/epimerase -
  EQJ84_RS20295 (EQJ84_20295) iolG 3930342..3931376 (-) 1035 WP_128442019.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=294152 EQJ84_RS20275 WP_003243527.1 3926839..3927528(-) (braR) [Bacillus subtilis strain SRCM104011]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=294152 EQJ84_RS20275 WP_003243527.1 3926839..3927528(-) (braR) [Bacillus subtilis strain SRCM104011]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406

Multiple sequence alignment