Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   DL538_RS17050 Genome accession   NZ_CP029609
Coordinates   3238015..3238659 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain G7     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3233015..3243659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DL538_RS17015 (DL538_16920) mrpB 3234203..3234634 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  DL538_RS17020 (DL538_16925) mrpC 3234634..3234975 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  DL538_RS17025 (DL538_16930) mrpD 3234968..3236449 (+) 1482 WP_003228817.1 Na+/H+ antiporter subunit D -
  DL538_RS17030 (DL538_16935) mrpE 3236455..3236931 (+) 477 WP_029318490.1 Na+/H+ antiporter subunit E -
  DL538_RS17035 (DL538_16940) mrpF 3236931..3237215 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  DL538_RS17040 (DL538_16945) mnhG 3237199..3237573 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  DL538_RS17045 (DL538_16950) yuxO 3237616..3237996 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  DL538_RS17050 (DL538_16955) comA 3238015..3238659 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  DL538_RS17055 (DL538_16960) comP 3238740..3241040 (-) 2301 WP_088300729.1 histidine kinase Regulator
  DL538_RS17060 (DL538_16965) comX 3241052..3241216 (-) 165 WP_015384519.1 competence pheromone ComX -
  DL538_RS17065 (DL538_16970) - 3241229..3242089 (-) 861 WP_041850585.1 polyprenyl synthetase family protein -
  DL538_RS17070 (DL538_16975) degQ 3242274..3242414 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  DL538_RS17075 - 3242636..3242761 (+) 126 WP_003228793.1 hypothetical protein -
  DL538_RS17080 (DL538_16980) - 3242875..3243243 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=294151 DL538_RS17050 WP_003220716.1 3238015..3238659(-) (comA) [Bacillus subtilis subsp. subtilis strain G7]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=294151 DL538_RS17050 WP_003220716.1 3238015..3238659(-) (comA) [Bacillus subtilis subsp. subtilis strain G7]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment