Detailed information NTG0029415

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: HAPS_RS09940
• Genome accession: NC_011852
• Coordinates: 2009216..2009932 (+)
• Length: 238 a.a.
• NCBI ID: WP_010787263.1
• Uniprot ID: -
• Organism: Glaesserella parasuis SH0165
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2004216..2014932

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HAPS_RS09900	-	2004746..2004997 (-)	252	WP_041603192.1	hypothetical protein	-
HAPS_RS09905 (HAPS_2042)	-	2004994..2005185 (-)	192	WP_015940041.1	hypothetical protein	-
HAPS_RS09910 (HAPS_2043)	crp	2005440..2006114 (-)	675	WP_010787261.1	cAMP-activated global transcriptional regulator CRP	Regulator
HAPS_RS09915 (HAPS_2044)	-	2006181..2006405 (-)	225	WP_005713165.1	YheU family protein	-
HAPS_RS09920 (HAPS_2045)	slmA	2006413..2007018 (-)	606	WP_005713169.1	nucleoid occlusion factor SlmA	-
HAPS_RS09925 (HAPS_2046)	dut	2007027..2007482 (-)	456	WP_015940042.1	dUTP diphosphatase	-
HAPS_RS09930 (HAPS_2047)	-	2007508..2007834 (-)	327	WP_005713172.1	hypothetical protein	-
HAPS_RS09935 (HAPS_2048)	coaBC	2007844..2009046 (-)	1203	WP_010787262.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
HAPS_RS09940 (HAPS_2049)	radC	2009216..2009932 (+)	717	WP_010787263.1	RadC family protein	Machinery gene
HAPS_RS09945 (HAPS_2050)	rpmB	2010058..2010294 (+)	237	WP_005713177.1	50S ribosomal protein L28	-
HAPS_RS09950 (HAPS_2051)	rpmG	2010306..2010476 (+)	171	WP_005624479.1	50S ribosomal protein L33	-
HAPS_RS09955 (HAPS_2052)	-	2010761..2011501 (+)	741	WP_235685011.1	TonB-dependent receptor domain-containing protein	-
HAPS_RS09960 (HAPS_2053)	-	2011670..2012035 (+)	366	WP_005713180.1	YgiW/YdeI family stress tolerance OB fold protein	-
HAPS_RS09965 (HAPS_2054)	-	2012096..2012767 (+)	672	WP_010787266.1	response regulator	-
HAPS_RS09970 (HAPS_2055)	qseC	2012754..2014154 (+)	1401	WP_015940045.1	quorum sensing histidine kinase QseC	-
HAPS_RS11970	-	2014276..2014338 (+)	63	Protein_2007	RNA-guided endonuclease TnpB family protein	-
HAPS_RS09975 (HAPS_2057)	-	2014546..2014833 (+)	288	WP_005713186.1	co-chaperone GroES	-

Sequence

Protein

• Length: 238 a.a.
• Molecular weight: 27225.39 Da
• Isoelectric Point: 4.7438

>NTDB_id=29415 HAPS_RS09940 WP_010787263.1 2009216..2009932(+) (radC) [Glaesserella parasuis SH0165]
MNESSSELMPREKLLKFGAEALSDAELLAIFLRTGIKGIPVMDLSESVLTAFGSLRGLLSATLEDFCKIKGLGQIQYIQL
QATKEMTKRYLSQQMKVNEMVDSPYLAVMYFQSELESWEREVFMVIFLDNQNRLIKTEKMFYGTINQASVHPREIIKEAL
KCNAAAILVAHNHPSGNCNPSEADRFLTRKIEMACDLVDIRFVDHIIVGKGDYFSFEEEKFEQENYEFPPCLDELKQV

Nucleotide

• Length: 717 bp

>NTDB_id=29415 HAPS_RS09940 WP_010787263.1 2009216..2009932(+) (radC) [Glaesserella parasuis SH0165]
ATGAATGAAAGTTCTAGTGAATTAATGCCAAGAGAAAAATTGCTGAAATTTGGTGCTGAAGCCTTAAGTGATGCTGAGCT
ATTGGCAATCTTTTTACGTACAGGAATTAAAGGGATACCCGTGATGGATCTATCGGAAAGCGTACTCACTGCCTTTGGTT
CATTACGGGGATTGCTGTCAGCAACATTAGAAGATTTCTGTAAAATCAAAGGATTAGGACAAATTCAGTATATTCAACTT
CAGGCAACCAAAGAGATGACGAAACGCTATTTATCGCAACAAATGAAAGTAAATGAAATGGTAGATAGCCCCTATTTAGC
CGTAATGTATTTTCAATCGGAACTGGAATCTTGGGAGCGAGAAGTATTTATGGTGATCTTTTTAGATAACCAAAATAGGT
TGATCAAAACAGAAAAAATGTTTTACGGTACGATCAACCAAGCCTCAGTTCACCCTCGTGAAATCATTAAAGAAGCCTTG
AAGTGTAATGCCGCCGCCATTTTAGTTGCACATAACCACCCATCTGGCAACTGCAATCCAAGTGAGGCAGATCGGTTTTT
GACTCGAAAAATAGAAATGGCGTGTGATTTAGTCGATATTCGCTTTGTTGATCATATTATTGTTGGCAAAGGTGACTATT
TTTCGTTCGAAGAAGAAAAGTTTGAACAGGAAAATTACGAATTTCCCCCTTGTTTAGATGAACTAAAGCAAGTATAA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (103-220)

• UPF0758 N-terminal (UPF0758_N) (5-77)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	61.111	90.756	0.555