Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   DL538_RS12745 Genome accession   NZ_CP029609
Coordinates   2481870..2482205 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis subsp. subtilis strain G7     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2476870..2487205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DL538_RS12725 (DL538_12680) gcvT 2477462..2478550 (-) 1089 WP_015714248.1 glycine cleavage system aminomethyltransferase GcvT -
  DL538_RS12730 (DL538_12685) hepAA 2478992..2480665 (+) 1674 WP_003230203.1 SNF2-related protein -
  DL538_RS12735 (DL538_12690) yqhG 2480686..2481480 (+) 795 WP_003230200.1 YqhG family protein -
  DL538_RS12740 (DL538_12695) sinI 2481663..2481836 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  DL538_RS12745 (DL538_12700) sinR 2481870..2482205 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  DL538_RS12750 (DL538_12705) tasA 2482298..2483083 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  DL538_RS12755 (DL538_12710) sipW 2483148..2483720 (-) 573 WP_072692741.1 signal peptidase I SipW -
  DL538_RS12760 (DL538_12715) tapA 2483704..2484465 (-) 762 WP_131227614.1 amyloid fiber anchoring/assembly protein TapA -
  DL538_RS12765 (DL538_12720) yqzG 2484737..2485063 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  DL538_RS12770 (DL538_12725) spoIITA 2485105..2485284 (-) 180 WP_072175549.1 YqzE family protein -
  DL538_RS12775 (DL538_12730) comGG 2485355..2485729 (-) 375 WP_029317914.1 ComG operon protein ComGG Machinery gene
  DL538_RS12780 (DL538_12735) comGF 2485730..2486113 (-) 384 WP_029317913.1 ComG operon protein ComGF Machinery gene
  DL538_RS12785 (DL538_12740) comGE 2486139..2486486 (-) 348 WP_015714254.1 ComG operon protein 5 Machinery gene
  DL538_RS12790 (DL538_12745) comGD 2486470..2486901 (-) 432 WP_015714255.1 comG operon protein ComGD Machinery gene
  DL538_RS12795 (DL538_12750) comGC 2486891..2487187 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=294130 DL538_RS12745 WP_003226345.1 2481870..2482205(+) (sinR) [Bacillus subtilis subsp. subtilis strain G7]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=294130 DL538_RS12745 WP_003226345.1 2481870..2482205(+) (sinR) [Bacillus subtilis subsp. subtilis strain G7]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment