Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   DL538_RS12545 Genome accession   NZ_CP029609
Coordinates   2447240..2448043 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain G7     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2442240..2453043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DL538_RS12520 (DL538_12480) glpQB 2443379..2444110 (-) 732 WP_015714234.1 glycerophosphodiester phosphodiesterase -
  DL538_RS12525 (DL538_12485) yqiI 2444189..2444809 (-) 621 WP_131227604.1 N-acetylmuramoyl-L-alanine amidase -
  DL538_RS12530 (DL538_12490) - 2444829..2445125 (-) 297 WP_014480225.1 hypothetical protein -
  DL538_RS12535 - 2445433..2445585 (+) 153 WP_014480226.1 hypothetical protein -
  DL538_RS12540 (DL538_12495) yqiG 2445658..2446776 (+) 1119 WP_131227606.1 NADH-dependent flavin oxidoreductase -
  DL538_RS12545 (DL538_12500) spo0A 2447240..2448043 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  DL538_RS12555 (DL538_12510) spoIVB 2448319..2449599 (-) 1281 WP_131227608.1 SpoIVB peptidase -
  DL538_RS12560 (DL538_12515) recN 2449774..2451504 (-) 1731 WP_029317928.1 DNA repair protein RecN Machinery gene
  DL538_RS12565 (DL538_12520) argR 2451541..2451990 (-) 450 WP_003230265.1 arginine repressor ArgR -
  DL538_RS12570 (DL538_12525) yqxC 2452088..2452933 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=294127 DL538_RS12545 WP_003226427.1 2447240..2448043(-) (spo0A) [Bacillus subtilis subsp. subtilis strain G7]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=294127 DL538_RS12545 WP_003226427.1 2447240..2448043(-) (spo0A) [Bacillus subtilis subsp. subtilis strain G7]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCTCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment