Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   AM1_RS12665 Genome accession   NC_009925
Coordinates   2828893..2829273 (+) Length   126 a.a.
NCBI ID   WP_012163244.1    Uniprot ID   B0C9B6
Organism   Acaryochloris marina MBIC11017     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2823893..2834273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM1_RS12650 (AM1_2793) - 2824951..2825484 (+) 534 WP_012163240.1 hypothetical protein -
  AM1_RS12655 (AM1_2794) - 2825527..2825808 (+) 282 WP_041659792.1 hypothetical protein -
  AM1_RS12660 (AM1_2796) - 2826281..2828410 (+) 2130 WP_012163243.1 glycosyltransferase -
  AM1_RS12665 (AM1_2797) pilH 2828893..2829273 (+) 381 WP_012163244.1 response regulator transcription factor Machinery gene
  AM1_RS12670 (AM1_2798) - 2829291..2829779 (+) 489 WP_012163245.1 CYTH domain-containing protein -
  AM1_RS12675 (AM1_2799) - 2829853..2830686 (-) 834 WP_010471733.1 prohibitin family protein -
  AM1_RS12680 (AM1_2800) - 2830717..2832129 (-) 1413 WP_012163246.1 cell wall metabolism sensor histidine kinase WalK -
  AM1_RS12685 (AM1_2801) hemJ 2832140..2832709 (-) 570 WP_012163247.1 protoporphyrinogen oxidase HemJ -
  AM1_RS12690 (AM1_2802) msrA 2832970..2833626 (-) 657 WP_012163248.1 peptide-methionine (S)-S-oxide reductase MsrA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14303.59 Da        Isoelectric Point: 4.7172

>NTDB_id=29407 AM1_RS12665 WP_012163244.1 2828893..2829273(+) (pilH) [Acaryochloris marina MBIC11017]
MTTVMVVDDSPTMRAMLTDMLQRNGLEVIEAEDGLAAKTMLQDSSYPDLVITDIVMPRMNGYELCRWVKNDLTDRNLPVI
MCSTKGEAFDRHWGMKQGGDAYITKPFNPSEMLDLIRKLLKTRAES

Nucleotide


Download         Length: 381 bp        

>NTDB_id=29407 AM1_RS12665 WP_012163244.1 2828893..2829273(+) (pilH) [Acaryochloris marina MBIC11017]
ATGACAACAGTAATGGTAGTTGATGACAGCCCCACCATGCGTGCCATGCTAACGGATATGTTACAGCGCAATGGTTTAGA
GGTCATTGAAGCTGAAGATGGTCTAGCAGCTAAAACGATGCTGCAAGACAGTAGCTATCCAGACTTGGTAATCACAGATA
TCGTGATGCCTCGCATGAACGGCTATGAATTGTGCCGCTGGGTCAAAAATGACCTGACAGACCGAAACTTACCCGTCATT
ATGTGCTCTACCAAAGGTGAAGCATTTGATCGACATTGGGGGATGAAGCAAGGGGGAGATGCTTACATCACCAAACCCTT
TAACCCCTCAGAAATGCTCGATTTGATTCGTAAGCTGCTCAAAACCCGGGCCGAGTCCTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B0C9B6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

54.098

96.825

0.524
  pilG Acinetobacter baumannii strain A118

46.491

90.476

0.421

Multiple sequence alignment