Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   DLD53_RS04800 Genome accession   NZ_CP029569
Coordinates   982905..983285 (-) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DA33098     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 977905..988285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLD53_RS04770 (DLD53_04770) tadA 978023..978526 (-) 504 WP_000033178.1 tRNA adenosine(34) deaminase TadA -
  DLD53_RS04775 (DLD53_04775) - 978533..979657 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  DLD53_RS04780 (DLD53_04780) ung 979654..980367 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  DLD53_RS04785 (DLD53_04785) - 980418..981014 (-) 597 WP_000908452.1 6-pyruvoyl trahydropterin synthase family protein -
  DLD53_RS04790 (DLD53_04790) gspK 981245..982204 (-) 960 WP_000301476.1 type II secretion system minor pseudopilin GspK -
  DLD53_RS04795 (DLD53_04795) xcpW 982204..982905 (-) 702 WP_000594589.1 type II secretion system minor pseudopilin GspJ Machinery gene
  DLD53_RS04800 (DLD53_04800) xcpV 982905..983285 (-) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  DLD53_RS04805 (DLD53_04805) - 983275..983829 (-) 555 WP_000841373.1 type II secretion system protein -
  DLD53_RS04810 (DLD53_04810) - 983839..984447 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  DLD53_RS04815 (DLD53_04815) - 984485..985258 (-) 774 WP_000497298.1 TatD family hydrolase -
  DLD53_RS04820 (DLD53_04820) - 985276..985617 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  DLD53_RS04825 (DLD53_04825) - 985629..986609 (-) 981 WP_001075411.1 DNA polymerase III subunit delta' -
  DLD53_RS04830 (DLD53_04830) kdsB 986621..987382 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=293730 DLD53_RS04800 WP_000836911.1 982905..983285(-) (xcpV) [Acinetobacter baumannii strain DA33098]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=293730 DLD53_RS04800 WP_000836911.1 982905..983285(-) (xcpV) [Acinetobacter baumannii strain DA33098]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1

Multiple sequence alignment