Detailed information NTG0293729

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: DLD53_RS04795
• Genome accession: NZ_CP029569
• Coordinates: 982204..982905 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594589.1
• Uniprot ID: A0A9P3CZ31
• Organism: Acinetobacter baumannii strain DA33098
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 977204..987905

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DLD53_RS04765 (DLD53_04765)	-	977510..977953 (-)	444	WP_001246675.1	SRPBCC family protein	-
DLD53_RS04770 (DLD53_04770)	tadA	978023..978526 (-)	504	WP_000033178.1	tRNA adenosine(34) deaminase TadA	-
DLD53_RS04775 (DLD53_04775)	-	978533..979657 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
DLD53_RS04780 (DLD53_04780)	ung	979654..980367 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
DLD53_RS04785 (DLD53_04785)	-	980418..981014 (-)	597	WP_000908452.1	6-pyruvoyl trahydropterin synthase family protein	-
DLD53_RS04790 (DLD53_04790)	gspK	981245..982204 (-)	960	WP_000301476.1	type II secretion system minor pseudopilin GspK	-
DLD53_RS04795 (DLD53_04795)	xcpW	982204..982905 (-)	702	WP_000594589.1	type II secretion system minor pseudopilin GspJ	Machinery gene
DLD53_RS04800 (DLD53_04800)	xcpV	982905..983285 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
DLD53_RS04805 (DLD53_04805)	-	983275..983829 (-)	555	WP_000841373.1	type II secretion system protein	-
DLD53_RS04810 (DLD53_04810)	-	983839..984447 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
DLD53_RS04815 (DLD53_04815)	-	984485..985258 (-)	774	WP_000497298.1	TatD family hydrolase	-
DLD53_RS04820 (DLD53_04820)	-	985276..985617 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
DLD53_RS04825 (DLD53_04825)	-	985629..986609 (-)	981	WP_001075411.1	DNA polymerase III subunit delta'	-
DLD53_RS04830 (DLD53_04830)	kdsB	986621..987382 (-)	762	WP_000680697.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26639.58 Da
• Isoelectric Point: 9.3468

>NTDB_id=293729 DLD53_RS04795 WP_000594589.1 982204..982905(-) (xcpW) [Acinetobacter baumannii strain DA33098]
MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=293729 DLD53_RS04795 WP_000594589.1 982204..982905(-) (xcpW) [Acinetobacter baumannii strain DA33098]
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.571	100	0.996