Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   DK843_RS00955 Genome accession   NZ_CP029554
Coordinates   201735..202529 (+) Length   264 a.a.
NCBI ID   WP_114072265.1    Uniprot ID   -
Organism   Chromobacterium phragmitis strain IIBBL 274-1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 196735..207529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK843_RS00925 (DK843_00925) - 196785..197507 (-) 723 WP_114062741.1 metallophosphoesterase -
  DK843_RS00930 (DK843_00930) - 197535..198188 (-) 654 WP_114072262.1 HD domain-containing protein -
  DK843_RS00935 (DK843_00935) - 198343..199191 (-) 849 WP_114072263.1 GNAT family N-acetyltransferase -
  DK843_RS00940 (DK843_00940) - 199188..199799 (-) 612 WP_114062744.1 AraC family transcriptional regulator -
  DK843_RS00945 (DK843_00945) pgeF 199912..200649 (-) 738 WP_114072264.1 peptidoglycan editing factor PgeF -
  DK843_RS00950 (DK843_00950) rluD 200639..201736 (-) 1098 WP_114062746.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DK843_RS00955 (DK843_00955) comL 201735..202529 (+) 795 WP_114072265.1 outer membrane protein assembly factor BamD Machinery gene
  DK843_RS00960 (DK843_00960) - 202597..203688 (-) 1092 WP_412842281.1 NAD(P)H-dependent flavin oxidoreductase -
  DK843_RS00965 (DK843_00965) - 203708..203899 (+) 192 WP_114062749.1 hypothetical protein -
  DK843_RS00970 (DK843_00970) rpsB 204059..204787 (+) 729 WP_114062750.1 30S ribosomal protein S2 -
  DK843_RS00975 (DK843_00975) tsf 204861..205727 (+) 867 WP_104947082.1 translation elongation factor Ts -
  DK843_RS00980 (DK843_00980) pyrH 205818..206537 (+) 720 WP_021477858.1 UMP kinase -
  DK843_RS00985 (DK843_00985) frr 206616..207173 (+) 558 WP_114063795.1 ribosome recycling factor -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 30383.58 Da        Isoelectric Point: 7.9877

>NTDB_id=293451 DK843_RS00955 WP_114072265.1 201735..202529(+) (comL) [Chromobacterium phragmitis strain IIBBL 274-1]
MKRYVVAAMLVMVGLAGCATTETYDETRGWTVEKLYSEAHDELNSGNYTRAVKLYETLEARFPYGRYAQQAQMDLAYTHY
KDGEPELAIASADRFIKLHPTHPNLDYIYYLKGLVYYNDDSGLLAKWAGQDMSERDPRAAREAFAAFRELTTRFPNSTYA
PDAKAKMIRLVDALGGNEMHVARYYMKRGAYLAAANRAQGVVKDYANTKYPEEALAIMVAAYDKLQLPQLRDDAHRVLAL
NYPQSQYLNKPWKVEEMPWWKLWK

Nucleotide


Download         Length: 795 bp        

>NTDB_id=293451 DK843_RS00955 WP_114072265.1 201735..202529(+) (comL) [Chromobacterium phragmitis strain IIBBL 274-1]
ATGAAAAGATACGTTGTTGCAGCTATGTTGGTGATGGTGGGGCTTGCCGGGTGTGCAACCACGGAAACCTACGACGAAAC
GCGCGGTTGGACCGTGGAGAAGCTCTATTCGGAAGCCCACGATGAGTTGAACAGCGGCAATTATACCCGCGCAGTCAAGC
TGTATGAAACGCTGGAAGCGCGTTTCCCCTACGGCCGCTACGCGCAGCAGGCCCAAATGGACCTGGCCTATACCCATTAC
AAGGACGGCGAGCCCGAGTTGGCCATCGCTTCCGCCGATCGCTTCATCAAGCTGCATCCCACGCATCCCAACCTTGATTA
CATCTATTATCTGAAGGGTTTGGTGTATTACAACGATGATTCGGGCCTGCTCGCCAAATGGGCCGGCCAGGACATGAGCG
AGCGGGATCCGCGCGCCGCGCGCGAGGCCTTCGCCGCCTTCCGCGAGCTGACAACCCGCTTCCCCAATAGCACTTACGCC
CCGGACGCCAAGGCGAAGATGATTCGCCTGGTGGACGCGCTGGGCGGCAACGAGATGCACGTGGCGCGCTACTACATGAA
GCGCGGCGCCTATCTGGCCGCGGCGAACCGAGCCCAGGGCGTGGTCAAGGATTATGCCAACACCAAGTACCCGGAAGAGG
CGCTGGCCATCATGGTGGCGGCTTACGACAAGCTGCAGTTGCCGCAGCTGCGCGACGACGCCCACCGGGTGCTGGCGCTG
AACTACCCGCAGAGCCAGTATCTGAACAAGCCGTGGAAGGTCGAAGAGATGCCGTGGTGGAAACTATGGAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(32-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

58.427

100

0.591
  comL Neisseria gonorrhoeae MS11

57.303

100

0.58

Multiple sequence alignment