Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LPEG9_RS15460 | Genome accession | NZ_CP029546 |
| Coordinates | 2914926..2915522 (-) | Length | 198 a.a. |
| NCBI ID | WP_003568462.1 | Uniprot ID | A0A0C9PXZ6 |
| Organism | Lacticaseibacillus paracasei strain EG9 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2909926..2920522
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPEG9_RS15435 (LPEG9_15435) | - | 2910785..2911378 (+) | 594 | WP_109990466.1 | TMEM175 family protein | - |
| LPEG9_RS15440 (LPEG9_15440) | - | 2911451..2911645 (-) | 195 | WP_003568474.1 | hypothetical protein | - |
| LPEG9_RS15445 (LPEG9_15445) | cydB | 2911672..2912691 (-) | 1020 | WP_003592400.1 | cytochrome d ubiquinol oxidase subunit II | - |
| LPEG9_RS15450 (LPEG9_15450) | - | 2912684..2914161 (-) | 1478 | Protein_2825 | cytochrome ubiquinol oxidase subunit I | - |
| LPEG9_RS15455 (LPEG9_15455) | rpsR | 2914603..2914839 (-) | 237 | WP_003568467.1 | 30S ribosomal protein S18 | - |
| LPEG9_RS15460 (LPEG9_15460) | ssb | 2914926..2915522 (-) | 597 | WP_003568462.1 | single-stranded DNA-binding protein | Machinery gene |
| LPEG9_RS15465 (LPEG9_15465) | rpsF | 2915553..2915849 (-) | 297 | WP_003568460.1 | 30S ribosomal protein S6 | - |
| LPEG9_RS15470 (LPEG9_15470) | ssb | 2915977..2916408 (-) | 432 | WP_003592397.1 | single-stranded DNA-binding protein | - |
| LPEG9_RS15475 (LPEG9_15475) | deoC | 2916714..2917418 (+) | 705 | WP_003568456.1 | deoxyribose-phosphate aldolase | - |
| LPEG9_RS15480 (LPEG9_15480) | gyrA | 2917523..2920144 (-) | 2622 | WP_003581640.1 | DNA gyrase subunit A | - |
Sequence
Protein
Download Length: 198 a.a. Molecular weight: 21138.87 Da Isoelectric Point: 4.9056
>NTDB_id=293424 LPEG9_RS15460 WP_003568462.1 2914926..2915522(-) (ssb) [Lacticaseibacillus paracasei strain EG9]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSSNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSSNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF
Nucleotide
Download Length: 597 bp
>NTDB_id=293424 LPEG9_RS15460 WP_003568462.1 2914926..2915522(-) (ssb) [Lacticaseibacillus paracasei strain EG9]
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGACGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAAGGATCCATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTATGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGACGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAAGGATCCATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTATGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.296 |
100 |
0.596 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
48.485 |
100 |
0.485 |