Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   EQI87_RS17350 Genome accession   NZ_CP035166
Coordinates   3292494..3293129 (-) Length   211 a.a.
NCBI ID   WP_046160834.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103971     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3287494..3298129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQI87_RS17330 (EQI87_17330) yvzF 3288551..3288736 (-) 186 WP_003244599.1 YvzF family protein -
  EQI87_RS17335 (EQI87_17335) gerAA 3288854..3290302 (+) 1449 WP_033884692.1 spore germination receptor protein GerAA -
  EQI87_RS17340 (EQI87_17340) gerAB 3290271..3291368 (+) 1098 WP_009968145.1 spore germination receptor protein GerAB -
  EQI87_RS17345 (EQI87_17345) gerAC 3291365..3292486 (+) 1122 WP_046381314.1 spore germination receptor protein GerAC -
  EQI87_RS17350 (EQI87_17350) vraR 3292494..3293129 (-) 636 WP_046160834.1 two-component system response regulator LiaR Regulator
  EQI87_RS17355 (EQI87_17355) liaS 3293107..3294189 (-) 1083 WP_015251253.1 two-component system sensor histidine kinase LiaS -
  EQI87_RS17360 (EQI87_17360) liaF 3294186..3294911 (-) 726 WP_014480832.1 LiaRS two-component regulatory system accessory protein LiaF -
  EQI87_RS17365 (EQI87_17365) liaG 3294945..3295817 (-) 873 WP_029318424.1 DUF4097 domain-containing protein -
  EQI87_RS17370 (EQI87_17370) liaH 3295918..3296595 (-) 678 WP_015714684.1 stress responsive protein LiaH -
  EQI87_RS17375 (EQI87_17375) liaI 3296622..3297002 (-) 381 WP_003243447.1 cell envelope stress-induced membrane anchor protein LiaI -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23095.72 Da        Isoelectric Point: 5.0163

>NTDB_id=293368 EQI87_RS17350 WP_046160834.1 3292494..3293129(-) (vraR) [Bacillus subtilis strain SRCM103971]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAAELSPDVILMDLVMEGMDGIQATKQICRELSDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALPHESLTKRELEILCL
IAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVN

Nucleotide


Download         Length: 636 bp        

>NTDB_id=293368 EQI87_RS17350 WP_046160834.1 3292494..3293129(-) (vraR) [Bacillus subtilis strain SRCM103971]
GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCTCGCGGCTTTTTTGGAGGCGCAGCCCGATAT
TGAAGTCATCGGCGAAGCATCGGACGGCAGCGAAGGTGTTCGGCTTGCTGCGGAACTGTCGCCTGATGTCATTTTAATGG
ACCTTGTCATGGAGGGCATGGATGGCATTCAAGCTACAAAGCAAATTTGCCGGGAGCTTTCTGACCCGAAAATTATTGTG
CTCACTAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAA
AGCGGCAGAAATCGCCGATGCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAGCTGGAGTCAAAAGTGGCGGGAAAAGTAT
TATCCAGGTTGCGCCACTCAGGTGAAAACGCGCTCCCGCATGAATCGCTTACAAAACGGGAGCTCGAAATACTCTGCCTG
ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTACGATTAAAACAGTCAAAACACATATTACGAA
TATTTTATCAAAGCTGGATGTCAGTGACCGGACGCAGGCGGCGGTGTACGCACACCGAAATCATCTCGTGAATTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.381

99.526

0.521
  degU Bacillus subtilis subsp. subtilis str. 168

38.117

100

0.403

Multiple sequence alignment