Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   DKK66_RS16945 Genome accession   NZ_CP029539
Coordinates   3673915..3674706 (+) Length   263 a.a.
NCBI ID   WP_131359967.1    Uniprot ID   A0A4P6TLL1
Organism   Aquitalea sp. USM4     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3668915..3679706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKK66_RS16935 (DKK66_16930) pgeF 3672071..3672826 (-) 756 WP_131359963.1 peptidoglycan editing factor PgeF -
  DKK66_RS16940 (DKK66_16935) rluD 3672813..3673916 (-) 1104 WP_131359965.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DKK66_RS16945 (DKK66_16940) comL 3673915..3674706 (+) 792 WP_131359967.1 outer membrane protein assembly factor BamD Machinery gene
  DKK66_RS16950 (DKK66_16945) - 3674795..3675133 (-) 339 WP_045846995.1 P-II family nitrogen regulator -
  DKK66_RS16955 (DKK66_16950) purL 3675281..3679240 (+) 3960 WP_131359969.1 phosphoribosylformylglycinamidine synthase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30259.38 Da        Isoelectric Point: 7.9420

>NTDB_id=293365 DKK66_RS16945 WP_131359967.1 3673915..3674706(+) (comL) [Aquitalea sp. USM4]
MKRYVVAAMLVMGLAGCATTETYDETRGWTVEKLYSEARDELNSGNYTRAVKLYETLEARYPYGRYAQQAEMDLAYTHYK
DNEPELAVAAADRFIKLHPAHPNVDYVYYLKGLVYYNDDQGMLSKWAGQDMSERDPKAARESFLAFRELTTRFPNSKYSA
DALEKMNRLVDALGGGEMHVARYYMKRGAYLAAANRAQNVVKEYSNTKYPEEALALMSVAYDKLGMTKLGDDAKRVLALN
YPKSAYLTQPWQVQEMPWWKVWK

Nucleotide


Download         Length: 792 bp        

>NTDB_id=293365 DKK66_RS16945 WP_131359967.1 3673915..3674706(+) (comL) [Aquitalea sp. USM4]
ATGAAAAGATACGTTGTAGCAGCAATGTTGGTGATGGGGCTTGCCGGTTGTGCAACCACGGAAACCTACGACGAAACGCG
CGGCTGGACCGTGGAAAAGCTCTACTCGGAAGCTCGGGATGAACTGAACAGCGGTAATTATACCCGTGCTGTCAAGCTGT
ACGAAACGCTGGAAGCGCGCTACCCCTATGGTCGCTATGCCCAGCAGGCCGAAATGGACCTGGCCTACACCCATTACAAG
GATAACGAACCCGAGCTGGCTGTCGCCGCTGCCGACCGATTCATCAAGCTGCACCCGGCCCACCCGAATGTGGACTACGT
GTACTACCTGAAGGGTTTGGTCTACTACAACGACGATCAGGGCATGCTGTCGAAATGGGCTGGCCAGGACATGAGCGAGC
GCGATCCGAAAGCCGCCCGCGAATCCTTCCTTGCCTTCCGCGAGCTGACCACGCGCTTCCCGAACAGCAAGTATAGTGCG
GATGCGCTGGAAAAGATGAACCGTCTGGTGGATGCACTGGGTGGCGGCGAAATGCATGTGGCGCGTTACTACATGAAACG
CGGCGCTTACCTGGCGGCTGCCAACCGTGCGCAGAACGTGGTGAAGGAATACTCCAACACCAAGTATCCGGAAGAAGCAC
TGGCGCTGATGTCGGTGGCCTACGACAAGCTGGGCATGACCAAGCTGGGCGACGACGCCAAGCGCGTGCTGGCGCTGAAC
TACCCCAAGAGCGCCTATCTGACCCAGCCGTGGCAAGTGCAGGAGATGCCGTGGTGGAAGGTGTGGAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(31-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P6TLL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

58.271

100

0.589
  comL Neisseria gonorrhoeae MS11

57.143

100

0.578

Multiple sequence alignment