Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   DKM32_RS13785 Genome accession   NZ_CP029536
Coordinates   2697619..2698860 (-) Length   413 a.a.
NCBI ID   WP_003565798.1    Uniprot ID   A0A0C9PVU8
Organism   Lacticaseibacillus paracasei strain LC355     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2692619..2703860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKM32_RS13780 - 2695867..2697594 (-) 1728 WP_112199620.1 proline--tRNA ligase -
  DKM32_RS13785 eeP 2697619..2698860 (-) 1242 WP_003565798.1 RIP metalloprotease RseP Regulator
  DKM32_RS13790 - 2698877..2699665 (-) 789 WP_003565800.1 phosphatidate cytidylyltransferase -
  DKM32_RS13795 - 2699701..2700453 (-) 753 WP_003588020.1 isoprenyl transferase -
  DKM32_RS13800 frr 2701006..2701563 (-) 558 WP_003565804.1 ribosome recycling factor -
  DKM32_RS13805 pyrH 2701563..2702282 (-) 720 WP_003565806.1 UMP kinase -
  DKM32_RS13810 tsf 2702518..2703399 (-) 882 WP_003565808.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45107.72 Da        Isoelectric Point: 8.6663

>NTDB_id=293334 DKM32_RS13785 WP_003565798.1 2697619..2698860(-) (eeP) [Lacticaseibacillus paracasei strain LC355]
MTTIIAFIVIFCILVVVHEFGHFYFAKRSGILVREFSIGMGPKLWASHKNNTTYTLRLLPLGGYVRMAGWQDEEDEIKPG
TMLSLILNDQGKVVRINASDKTTLAGGMPVQVSRVDLVKDLVIEGYPNGDETALQTWQVDHDATIIEEDGTEVQIAPEDV
QFQNAPVWRRLLVNFAGPMNNFLLAILAFIIYGLFFGVQVLNTNQIGTVVPGYPAAEAGLKSNATVQTIDGQKMSSFTDL
SKIVSKNAGKSVTFTVKENGKSKNIVIKPNKEGKIGVEAHVDKSPANAIPFGFSQTWNLAVRTWDVLKSMVTGGFSLNKL
AGPVGIYTMTSQSAKGGIQGLLFFMGYLSLGLGITNLLPIPVLDGGKILLNLIEIIRRKPLKPETEGVVTMIGLGLMVLL
MLAVTINDIMRYF

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=293334 DKM32_RS13785 WP_003565798.1 2697619..2698860(-) (eeP) [Lacticaseibacillus paracasei strain LC355]
ATGACCACTATCATCGCCTTTATCGTTATCTTCTGCATTCTTGTGGTAGTTCACGAGTTTGGCCATTTTTACTTTGCAAA
ACGCAGCGGCATTCTAGTCCGGGAATTTTCGATCGGTATGGGCCCGAAGCTGTGGGCGTCGCACAAGAACAATACGACCT
ACACGCTGCGGTTGCTACCACTTGGCGGATACGTCCGCATGGCTGGCTGGCAAGATGAGGAGGACGAGATTAAACCCGGG
ACGATGCTGAGCCTGATTCTTAACGATCAAGGCAAGGTTGTCCGGATCAATGCCAGTGACAAAACGACTTTGGCCGGCGG
AATGCCGGTTCAAGTGAGTCGCGTCGATTTAGTTAAGGATCTGGTGATTGAAGGTTATCCAAACGGGGATGAAACAGCCT
TGCAAACTTGGCAGGTTGACCACGATGCGACGATCATTGAAGAAGACGGAACCGAGGTTCAGATCGCGCCAGAAGACGTT
CAGTTTCAAAACGCCCCGGTTTGGCGCCGATTATTGGTCAACTTCGCCGGTCCGATGAATAACTTCTTACTCGCGATTCT
AGCTTTTATTATTTACGGTCTGTTTTTTGGTGTTCAGGTGCTCAATACCAACCAAATCGGAACAGTTGTGCCAGGTTATC
CAGCCGCAGAAGCTGGTCTTAAGTCCAATGCGACGGTGCAAACGATTGACGGTCAAAAAATGTCATCATTCACGGATCTT
TCAAAGATCGTCAGTAAAAATGCCGGTAAATCAGTGACATTTACCGTGAAGGAAAACGGTAAAAGCAAGAACATCGTGAT
CAAGCCGAATAAAGAAGGCAAGATCGGGGTTGAAGCACACGTCGATAAGTCCCCAGCAAATGCCATTCCTTTTGGCTTTT
CTCAAACTTGGAATTTGGCTGTCCGCACTTGGGACGTGCTCAAATCCATGGTGACCGGCGGCTTTTCACTCAATAAACTG
GCTGGCCCGGTTGGTATTTATACCATGACGAGTCAAAGTGCCAAAGGCGGTATTCAAGGATTACTCTTCTTTATGGGTTA
CTTGAGTCTCGGCTTAGGGATTACCAATTTGTTGCCGATTCCAGTGCTTGATGGTGGTAAAATTCTTTTGAACCTGATCG
AAATTATTCGCCGTAAGCCATTAAAACCGGAAACGGAAGGCGTTGTGACCATGATTGGCTTGGGCCTGATGGTTCTATTA
ATGCTAGCGGTCACAATCAACGATATCATGCGCTACTTTTAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_6)

(206-257)

Peptidase family M50 (Peptidase_M50)

(6-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C9PVU8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

49.292

100

0.506
  eeP Streptococcus thermophilus LMD-9

49.057

100

0.504

Multiple sequence alignment