Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DKM32_RS05315 | Genome accession | NZ_CP029536 |
| Coordinates | 1041658..1042254 (+) | Length | 198 a.a. |
| NCBI ID | WP_003581643.1 | Uniprot ID | - |
| Organism | Lacticaseibacillus paracasei strain LC355 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1031443..1058253 | 1041658..1042254 | within | 0 |
Gene organization within MGE regions
Location: 1031443..1058253
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DKM32_RS05265 | dnaN | 1031443..1032582 (+) | 1140 | WP_003568447.1 | DNA polymerase III subunit beta | - |
| DKM32_RS05275 | yaaA | 1033435..1033647 (+) | 213 | WP_003568449.1 | S4 domain-containing protein YaaA | - |
| DKM32_RS05280 | recF | 1033644..1034759 (+) | 1116 | WP_003572804.1 | DNA replication/repair protein RecF | - |
| DKM32_RS05290 | gyrB | 1035012..1036973 (+) | 1962 | WP_003568453.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| DKM32_RS05295 | gyrA | 1037035..1039656 (+) | 2622 | WP_003581640.1 | DNA gyrase subunit A | - |
| DKM32_RS05300 | deoC | 1039761..1040465 (-) | 705 | WP_003568456.1 | deoxyribose-phosphate aldolase | - |
| DKM32_RS05305 | ssb | 1040772..1041203 (+) | 432 | WP_003568458.1 | single-stranded DNA-binding protein | - |
| DKM32_RS05310 | rpsF | 1041331..1041627 (+) | 297 | WP_003568460.1 | 30S ribosomal protein S6 | - |
| DKM32_RS05315 | ssb | 1041658..1042254 (+) | 597 | WP_003581643.1 | single-stranded DNA-binding protein | Machinery gene |
| DKM32_RS05320 | rpsR | 1042341..1042577 (+) | 237 | WP_003568467.1 | 30S ribosomal protein S18 | - |
| DKM32_RS05325 | - | 1042938..1043858 (-) | 921 | WP_003574021.1 | IS30 family transposase | - |
| DKM32_RS05330 | - | 1044074..1045552 (+) | 1479 | WP_003586368.1 | cytochrome ubiquinol oxidase subunit I | - |
| DKM32_RS05335 | cydB | 1045545..1046564 (+) | 1020 | WP_003568540.1 | cytochrome d ubiquinol oxidase subunit II | - |
| DKM32_RS05340 | - | 1046591..1046785 (+) | 195 | WP_003568474.1 | hypothetical protein | - |
| DKM32_RS05345 | - | 1046858..1047451 (-) | 594 | WP_003581645.1 | TMEM175 family protein | - |
| DKM32_RS05350 | - | 1047845..1048216 (-) | 372 | WP_112199557.1 | hypothetical protein | - |
| DKM32_RS05355 | - | 1048335..1049255 (+) | 921 | WP_003574021.1 | IS30 family transposase | - |
| DKM32_RS05360 | - | 1049508..1049810 (-) | 303 | WP_003581648.1 | hypothetical protein | - |
| DKM32_RS05365 | - | 1050089..1050946 (-) | 858 | WP_112199558.1 | CPBP family intramembrane glutamic endopeptidase | - |
| DKM32_RS05370 | - | 1051026..1051208 (-) | 183 | WP_003568482.1 | hypothetical protein | - |
| DKM32_RS05375 | - | 1051259..1051438 (-) | 180 | WP_003659010.1 | hypothetical protein | - |
| DKM32_RS05380 | - | 1052004..1053380 (+) | 1377 | WP_112199538.1 | transposase | - |
| DKM32_RS05385 | - | 1053527..1054762 (-) | 1236 | WP_003577228.1 | cell wall hydrolase P40 | - |
| DKM32_RS05390 | - | 1054966..1057539 (-) | 2574 | WP_003577229.1 | ABC transporter permease | - |
| DKM32_RS05395 | - | 1057552..1058253 (-) | 702 | WP_003577230.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 198 a.a. Molecular weight: 21154.92 Da Isoelectric Point: 4.9056
>NTDB_id=293322 DKM32_RS05315 WP_003581643.1 1041658..1042254(+) (ssb) [Lacticaseibacillus paracasei strain LC355]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNLPSFGSQGAPNNASSSNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNLPSFGSQGAPNNASSSNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF
Nucleotide
Download Length: 597 bp
>NTDB_id=293322 DKM32_RS05315 WP_003581643.1 1041658..1042254(+) (ssb) [Lacticaseibacillus paracasei strain LC355]
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGACGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAGGGATCCATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTATGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCTGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGACGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAGGGATCCATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTATGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCTGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.296 |
100 |
0.596 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
48.485 |
100 |
0.485 |