Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0J   Type   Regulator
Locus tag   DK181_RS10745 Genome accession   NZ_CP029490
Coordinates   2197368..2198135 (+) Length   255 a.a.
NCBI ID   WP_002960391.1    Uniprot ID   -
Organism   Streptococcus sobrinus strain SL1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2192368..2203135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK181_RS10735 (DK182_10735) rlmH 2195425..2195904 (-) 480 WP_028798461.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  DK181_RS10740 (DK182_10740) htrA 2196100..2197308 (+) 1209 WP_002960389.1 S1C family serine protease Regulator
  DK181_RS10745 (DK182_10745) spo0J 2197368..2198135 (+) 768 WP_002960391.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 255 a.a.        Molecular weight: 29281.74 Da        Isoelectric Point: 10.0064

>NTDB_id=293189 DK181_RS10745 WP_002960391.1 2197368..2198135(+) (spo0J) [Streptococcus sobrinus strain SL1]
MTVELKELKLSDISPNPFQPRLTFKQEELEELADSIKENGLIQPIIVRKSAVFGYELIAGERRFRACQLAQLETIPAIIK
ELSDQDSRIQAIIENLQRSDLNPIEEAKAYRNLIETNRMTHEEIAKYMGKSRPYITNFLRLLNLSAPLQKALEDGSLSSG
HARLLLGMRDQEQEAWLNKIRDNKLSVRELERQSKPRTKQKKAKQTNLFKKDLEENLSRALGLPVNLSMTKKQAGKLTIT
FSSQDDLNRIINKLN

Nucleotide


Download         Length: 768 bp        

>NTDB_id=293189 DK181_RS10745 WP_002960391.1 2197368..2198135(+) (spo0J) [Streptococcus sobrinus strain SL1]
ATGACAGTAGAATTAAAAGAATTGAAATTAAGCGATATCTCACCCAATCCCTTTCAACCCCGCTTAACTTTTAAGCAGGA
GGAGTTGGAGGAGCTGGCCGATTCCATCAAAGAAAACGGCCTGATTCAACCCATTATTGTCCGAAAATCAGCTGTCTTTG
GCTATGAATTGATAGCTGGCGAACGACGTTTTCGAGCCTGCCAATTGGCGCAATTAGAGACTATTCCGGCTATTATCAAA
GAACTTTCAGATCAAGACAGTCGCATTCAGGCCATCATTGAAAATTTGCAACGATCTGACCTCAATCCCATTGAGGAGGC
CAAGGCCTACCGAAATCTGATTGAAACCAATCGGATGACCCATGAAGAAATCGCTAAGTACATGGGTAAATCGCGTCCCT
ATATCACTAACTTTTTGCGACTCTTGAATCTATCTGCTCCTTTACAAAAAGCTCTTGAAGACGGCAGCCTATCTTCTGGC
CATGCCCGTCTCCTCTTAGGAATGAGAGACCAAGAACAAGAGGCTTGGCTGAACAAAATTAGAGACAATAAGTTGTCTGT
CAGAGAATTAGAAAGACAGTCAAAACCACGGACCAAGCAAAAGAAGGCGAAACAAACCAATCTCTTCAAGAAAGATTTAG
AAGAAAATCTATCAAGAGCTCTCGGCTTGCCGGTCAATCTCTCAATGACCAAAAAGCAGGCTGGCAAGTTGACCATTACC
TTTTCCTCCCAAGATGACTTGAACAGAATTATCAACAAGCTTAATTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

60.547

100

0.608


Multiple sequence alignment