Detailed information
Bioinformatically predicted
Overview
| Name | rcrR | Type | Regulator |
| Locus tag | DK181_RS05035 | Genome accession | NZ_CP029490 |
| Coordinates | 1053335..1053763 (+) | Length | 142 a.a. |
| NCBI ID | WP_002959424.1 | Uniprot ID | U2J2W6 |
| Organism | Streptococcus sobrinus strain SL1 | ||
| Function | regulate competence (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1037611..1059991 | 1053335..1053763 | within | 0 |
Gene organization within MGE regions
Location: 1037611..1059991
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DK181_RS10925 | - | 1037611..1037994 (+) | 384 | Protein_933 | hypothetical protein | - |
| DK181_RS04975 (DK182_04975) | - | 1038335..1040071 (+) | 1737 | WP_002962563.1 | ABC transporter ATP-binding protein | - |
| DK181_RS04980 (DK182_04980) | - | 1040321..1042072 (+) | 1752 | WP_028798405.1 | ABC transporter ATP-binding protein | - |
| DK181_RS04985 (DK182_04985) | - | 1042240..1043004 (-) | 765 | WP_002963402.1 | NUDIX domain-containing protein | - |
| DK181_RS04990 (DK182_04990) | pnuC | 1043001..1043822 (-) | 822 | Protein_937 | nicotinamide riboside transporter PnuC | - |
| DK181_RS04995 (DK182_04995) | - | 1043838..1044944 (-) | 1107 | WP_032798528.1 | AAA family ATPase | - |
| DK181_RS05000 (DK182_05000) | - | 1045644..1046153 (-) | 510 | WP_002963409.1 | HdeD family acid-resistance protein | - |
| DK181_RS05005 (DK182_05005) | gdhA | 1046376..1047728 (+) | 1353 | WP_002963410.1 | NADP-specific glutamate dehydrogenase | - |
| DK181_RS05010 (DK182_05010) | - | 1048322..1048774 (+) | 453 | WP_002959432.1 | LytTR family DNA-binding domain-containing protein | - |
| DK181_RS05015 (DK182_05015) | - | 1048764..1049207 (+) | 444 | WP_002959430.1 | hypothetical protein | - |
| DK181_RS05020 (DK182_05020) | - | 1049207..1050052 (+) | 846 | WP_002959428.1 | ABC transporter ATP-binding protein | - |
| DK181_RS05025 (DK182_05025) | - | 1050033..1050821 (+) | 789 | WP_002959426.1 | ABC transporter permease subunit | - |
| DK181_RS05030 (DK182_05030) | - | 1051018..1053113 (-) | 2096 | Protein_945 | surface-anchored 5'-nucleotidase | - |
| DK181_RS05035 (DK182_05035) | rcrR | 1053335..1053763 (+) | 429 | WP_002959424.1 | MarR family winged helix-turn-helix transcriptional regulator | Regulator |
| DK181_RS05040 (DK182_05040) | rcrP | 1053771..1055600 (+) | 1830 | WP_002959422.1 | ABC transporter ATP-binding protein | Regulator |
| DK181_RS05045 (DK182_05045) | rcrQ | 1055590..1057338 (+) | 1749 | WP_028798403.1 | ABC transporter ATP-binding protein | Regulator |
| DK181_RS05050 (DK182_05050) | - | 1057696..1058331 (+) | 636 | WP_002959419.1 | ABC transporter permease | - |
| DK181_RS05055 (DK182_05055) | - | 1058321..1059235 (+) | 915 | WP_002959417.1 | glycine betaine ABC transporter substrate-binding protein | - |
| DK181_RS05060 (DK182_05060) | - | 1059242..1059991 (+) | 750 | WP_019770237.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 16696.60 Da Isoelectric Point: 10.3649
>NTDB_id=293162 DK181_RS05035 WP_002959424.1 1053335..1053763(+) (rcrR) [Streptococcus sobrinus strain SL1]
MKDPFDIFRTFINTMETSVQELAKKHGVEHLAGPQGFTVSYLFENRDKEIFIKDIEERLRISKSVASNLIKRMEKNGFIQ
VKPSLKDKRYKQIVLTELGLDKAEKIKVFRSKIEEIILKDIDKKNLEVARRVFLQIKTNLEK
MKDPFDIFRTFINTMETSVQELAKKHGVEHLAGPQGFTVSYLFENRDKEIFIKDIEERLRISKSVASNLIKRMEKNGFIQ
VKPSLKDKRYKQIVLTELGLDKAEKIKVFRSKIEEIILKDIDKKNLEVARRVFLQIKTNLEK
Nucleotide
Download Length: 429 bp
>NTDB_id=293162 DK181_RS05035 WP_002959424.1 1053335..1053763(+) (rcrR) [Streptococcus sobrinus strain SL1]
ATGAAAGATCCCTTTGACATTTTCAGAACTTTCATCAATACTATGGAAACTAGTGTCCAAGAGTTGGCCAAAAAGCATGG
GGTGGAGCATTTAGCTGGCCCCCAAGGCTTTACGGTCTCTTATCTTTTTGAAAACCGAGACAAAGAAATTTTCATAAAAG
ACATTGAAGAGAGGCTAAGAATTTCCAAATCTGTCGCTAGTAATCTCATCAAACGGATGGAGAAGAATGGCTTTATCCAA
GTCAAGCCTTCCCTCAAGGACAAACGCTATAAGCAGATTGTTCTGACAGAACTTGGCCTTGATAAGGCTGAGAAGATTAA
GGTATTCCGTTCCAAAATCGAAGAGATTATTCTTAAGGATATTGATAAGAAGAATCTGGAAGTTGCCCGCCGGGTTTTTT
TGCAAATCAAAACTAATTTAGAAAAGTAG
ATGAAAGATCCCTTTGACATTTTCAGAACTTTCATCAATACTATGGAAACTAGTGTCCAAGAGTTGGCCAAAAAGCATGG
GGTGGAGCATTTAGCTGGCCCCCAAGGCTTTACGGTCTCTTATCTTTTTGAAAACCGAGACAAAGAAATTTTCATAAAAG
ACATTGAAGAGAGGCTAAGAATTTCCAAATCTGTCGCTAGTAATCTCATCAAACGGATGGAGAAGAATGGCTTTATCCAA
GTCAAGCCTTCCCTCAAGGACAAACGCTATAAGCAGATTGTTCTGACAGAACTTGGCCTTGATAAGGCTGAGAAGATTAA
GGTATTCCGTTCCAAAATCGAAGAGATTATTCTTAAGGATATTGATAAGAAGAATCTGGAAGTTGCCCGCCGGGTTTTTT
TGCAAATCAAAACTAATTTAGAAAAGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rcrR | Streptococcus mutans UA159 |
64.789 |
100 |
0.648 |