Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   SALB1_RS01900 Genome accession   NZ_CP029488
Coordinates   439094..440056 (+) Length   320 a.a.
NCBI ID   WP_109992319.1    Uniprot ID   A0A2Z3IZI6
Organism   Salinisphaera sp. LB1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 434094..445056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALB1_RS01885 (SALB1_0394) thiE 434628..435257 (+) 630 WP_109992316.1 thiamine phosphate synthase -
  SALB1_RS01890 (SALB1_0395) hemL 435368..436684 (+) 1317 WP_109992317.1 glutamate-1-semialdehyde 2,1-aminomutase -
  SALB1_RS01895 (SALB1_0396) - 436703..438754 (+) 2052 WP_109992318.1 LssY C-terminal domain-containing protein -
  SALB1_RS01900 (SALB1_0397) pilA 439094..440056 (+) 963 WP_109992319.1 signal recognition particle-docking protein FtsY Machinery gene
  SALB1_RS01905 (SALB1_0398) ftsE 440127..440792 (+) 666 WP_109992320.1 cell division ATP-binding protein FtsE -
  SALB1_RS01910 (SALB1_0399) ftsX 440795..441778 (+) 984 WP_109992321.1 permease-like cell division protein FtsX -
  SALB1_RS01915 (SALB1_0400) rpoH 441915..442790 (+) 876 WP_304572135.1 RNA polymerase sigma factor RpoH -
  SALB1_RS01920 (SALB1_0401) - 442828..444417 (+) 1590 WP_109992322.1 glucan biosynthesis protein -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 34044.97 Da        Isoelectric Point: 5.9672

>NTDB_id=293122 SALB1_RS01900 WP_109992319.1 439094..440056(+) (pilA) [Salinisphaera sp. LB1]
MAKPDAPKTTKLKQPGFLTRMRASLNKGNSWLTYDLRNLLPGETVDQDALDELETQLLLADVGVDATGQVMHRLQTLYDG
GQLRTSKDLGKSLREHLGNILAPCEAPLAIPDDIKPYVILMVGVNGVGKTTTIGKLSKKLQDAGKSVMLAAGDTFRAAAV
EQLTEWGERNNVPVVSQGSGADSASVVFDAYSRATARGVDVLIADTAGRLHTQGHLMEELKKIKRVLAKQNADAPHEIML
VVDATTGGNALQQAVAFNDAVGLTGITVTKLDGSASGGVVFAICQKLGLPLRFIGVGETVADLGVFEAEHFMDALFDRQA

Nucleotide


Download         Length: 963 bp        

>NTDB_id=293122 SALB1_RS01900 WP_109992319.1 439094..440056(+) (pilA) [Salinisphaera sp. LB1]
ATGGCCAAGCCCGACGCCCCGAAGACCACGAAGCTCAAGCAGCCGGGTTTTTTGACCCGCATGCGCGCCAGCCTGAACAA
GGGCAATTCGTGGCTCACCTACGATCTGCGCAACCTGTTGCCCGGCGAGACCGTGGACCAGGACGCGCTCGACGAACTCG
AGACCCAGCTGCTGCTGGCCGACGTCGGCGTGGACGCCACCGGCCAGGTCATGCATCGGCTGCAGACGCTCTACGACGGC
GGCCAACTGCGCACATCCAAGGATCTCGGCAAGTCGCTGCGCGAACATCTGGGCAATATCCTGGCGCCCTGCGAGGCGCC
GTTGGCGATCCCGGACGACATCAAGCCCTATGTGATCCTCATGGTCGGCGTGAACGGCGTCGGCAAGACCACGACCATCG
GCAAGCTGTCGAAGAAACTGCAGGATGCCGGCAAGTCGGTGATGCTCGCCGCCGGCGATACCTTTCGCGCGGCGGCGGTC
GAACAGCTCACCGAGTGGGGCGAGCGCAACAACGTGCCCGTGGTCTCGCAGGGCAGCGGCGCCGATTCGGCCTCGGTGGT
CTTTGACGCCTATTCGCGCGCTACCGCGCGCGGCGTCGACGTGCTGATCGCGGACACGGCCGGGCGGCTGCATACCCAGG
GCCACCTGATGGAGGAGCTCAAGAAGATCAAGCGCGTGCTGGCCAAGCAGAACGCCGACGCGCCGCACGAAATCATGCTG
GTGGTCGACGCCACCACCGGCGGCAACGCACTGCAGCAGGCCGTGGCCTTCAACGACGCGGTCGGGCTGACCGGCATCAC
GGTGACCAAGCTCGACGGCTCGGCCTCCGGCGGCGTAGTGTTCGCCATCTGCCAGAAACTGGGACTGCCGCTGCGCTTTA
TCGGCGTGGGCGAAACGGTCGCCGATCTGGGCGTATTCGAGGCCGAGCATTTCATGGACGCACTGTTCGATCGGCAAGCG
TAG

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(117-316)

SRP54-type protein, helical bundle domain (SRP54_N)

(37-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z3IZI6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.216

99.688

0.491

Multiple sequence alignment