Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   CPZ25_RS03950 Genome accession   NZ_CP029487
Coordinates   788704..789399 (-) Length   231 a.a.
NCBI ID   WP_096919809.1    Uniprot ID   A0A4P9C7D3
Organism   Eubacterium maltosivorans strain YI     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 783704..794399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPZ25_RS03925 (CPZ25_003950) - 783755..785173 (-) 1419 WP_096919813.1 C69 family dipeptidase -
  CPZ25_RS03930 (CPZ25_003955) - 785383..786432 (-) 1050 WP_096919812.1 response regulator -
  CPZ25_RS03940 (CPZ25_003965) - 786799..787197 (+) 399 WP_096919811.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  CPZ25_RS03945 (CPZ25_003970) - 787243..788691 (-) 1449 WP_096919810.1 HAMP domain-containing sensor histidine kinase -
  CPZ25_RS03950 (CPZ25_003975) scnR 788704..789399 (-) 696 WP_096919809.1 response regulator transcription factor Regulator
  CPZ25_RS03955 (CPZ25_003980) - 789552..790460 (+) 909 WP_058694416.1 ABC transporter ATP-binding protein -
  CPZ25_RS03960 (CPZ25_003985) - 790460..791209 (+) 750 WP_096919808.1 ABC transporter permease -
  CPZ25_RS03965 (CPZ25_003990) - 791222..791956 (+) 735 WP_096919807.1 ABC transporter permease -
  CPZ25_RS03970 (CPZ25_003995) - 792071..793555 (-) 1485 WP_096919806.1 glycerol kinase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 25728.81 Da        Isoelectric Point: 5.0500

>NTDB_id=293108 CPZ25_RS03950 WP_096919809.1 788704..789399(-) (scnR) [Eubacterium maltosivorans strain YI]
MDYIKDKGILLVDDEPELLKLVHKILENEGFAKVYTASSVAEGMTVFLEKAPDMAVLDVMLPDGEGFELLKFIRNSSDIP
VLFLSARGNAEDRFTGFGLGADDYIIKPFLPKELVFRITAILKRAYKNEAPTFTLADATIDLDRAEIIRGEEHLPLTAKE
HAILQKLYENAGKIVTIGSLCDYVWEGDSYGYEKPLMAHIGRIREKIEADPSHPKALVTAKGLGYKLLVSK

Nucleotide


Download         Length: 696 bp        

>NTDB_id=293108 CPZ25_RS03950 WP_096919809.1 788704..789399(-) (scnR) [Eubacterium maltosivorans strain YI]
ATGGATTACATTAAAGATAAAGGCATTCTTCTGGTCGACGATGAGCCAGAGCTTTTAAAGCTGGTGCATAAGATACTCGA
AAATGAAGGCTTTGCGAAGGTTTATACAGCGTCGAGCGTGGCCGAGGGTATGACTGTTTTTCTGGAAAAAGCTCCAGATA
TGGCAGTTCTTGATGTAATGCTGCCAGATGGTGAGGGTTTTGAGCTGCTTAAATTCATCCGGAATTCTTCGGATATCCCG
GTGCTTTTTTTATCAGCCCGGGGCAATGCCGAGGACCGGTTCACCGGCTTTGGTTTGGGAGCGGATGATTATATTATCAA
GCCCTTTCTGCCCAAGGAGCTTGTGTTCAGGATCACAGCTATTTTAAAACGTGCCTACAAAAACGAAGCGCCGACCTTTA
CCCTGGCCGACGCCACAATCGATCTGGATCGCGCTGAGATTATCAGGGGAGAGGAGCATCTGCCTCTTACCGCCAAAGAG
CATGCTATCCTCCAAAAACTTTATGAAAATGCAGGAAAAATTGTGACGATTGGCTCCCTCTGCGACTATGTATGGGAGGG
CGATAGCTATGGTTATGAAAAACCGCTTATGGCGCATATAGGCCGTATCCGGGAAAAAATCGAGGCAGATCCCAGCCATC
CAAAAGCCCTTGTGACGGCCAAGGGGCTGGGTTATAAGCTGTTAGTGAGCAAATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P9C7D3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50

99.567

0.498

Multiple sequence alignment