Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   DKK89_RS06415 Genome accession   NZ_CP029474
Coordinates   1258306..1258875 (+) Length   189 a.a.
NCBI ID   WP_000872882.1    Uniprot ID   A0A7U7EXA1
Organism   Staphylococcus aureus strain USA 100 isolate 30-47     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1253306..1263875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKK89_RS06390 (DKK89_06385) cysE 1254519..1255166 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  DKK89_RS06395 (DKK89_06390) cysS 1255150..1256550 (+) 1401 WP_000631969.1 cysteine--tRNA ligase -
  DKK89_RS06400 (DKK89_06395) - 1256543..1256947 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  DKK89_RS06405 (DKK89_06400) rlmB 1256955..1257701 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  DKK89_RS06410 (DKK89_06405) - 1257701..1258225 (+) 525 WP_000664737.1 NYN domain-containing protein -
  DKK89_RS06415 (DKK89_06410) sigH 1258306..1258875 (+) 570 WP_000872882.1 RNA polymerase sigma factor Regulator
  DKK89_RS06420 (DKK89_06415) rpmG 1258990..1259133 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  DKK89_RS06425 (DKK89_06420) secE 1259189..1259371 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  DKK89_RS06430 (DKK89_06425) nusG 1259384..1259932 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  DKK89_RS06435 (DKK89_06430) rplK 1260113..1260535 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  DKK89_RS06440 (DKK89_06435) rplA 1260743..1261435 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  DKK89_RS06450 (DKK89_06445) rplJ 1261706..1262206 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  DKK89_RS06455 (DKK89_06450) rplL 1262249..1262617 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  DKK89_RS06460 (DKK89_06455) - 1262792..1263400 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23044.91 Da        Isoelectric Point: 9.4170

>NTDB_id=292986 DKK89_RS06415 WP_000872882.1 1258306..1258875(+) (sigH) [Staphylococcus aureus strain USA 100 isolate 30-47]
MKYDLTTQDSTIKRNNSINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=292986 DKK89_RS06415 WP_000872882.1 1258306..1258875(+) (sigH) [Staphylococcus aureus strain USA 100 isolate 30-47]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATTCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7EXA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

100

100

1
  sigH Staphylococcus aureus MW2

97.884

100

0.979

Multiple sequence alignment