Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BPUM_RS14210 Genome accession   NC_009848
Coordinates   2835320..2835961 (-) Length   213 a.a.
NCBI ID   WP_003213500.1    Uniprot ID   A0AB34QVB6
Organism   Bacillus pumilus SAFR-032     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2830320..2840961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPUM_RS14175 (BPUM_2830) - 2831453..2831884 (+) 432 WP_012011101.1 Na(+)/H(+) antiporter subunit B -
  BPUM_RS14180 (BPUM_2831) - 2831884..2832225 (+) 342 WP_012011102.1 Na(+)/H(+) antiporter subunit C -
  BPUM_RS14185 (BPUM_2832) - 2832218..2833696 (+) 1479 WP_041815889.1 Na+/H+ antiporter subunit D -
  BPUM_RS14190 (BPUM_2833) - 2833703..2834182 (+) 480 WP_012011104.1 Na+/H+ antiporter subunit E -
  BPUM_RS14195 (BPUM_2834) - 2834182..2834463 (+) 282 WP_012011105.1 Na(+)/H(+) antiporter subunit F1 -
  BPUM_RS14200 (BPUM_2835) mnhG 2834447..2834821 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  BPUM_RS14205 (BPUM_2836) - 2834907..2835296 (-) 390 WP_003213775.1 hotdog fold thioesterase -
  BPUM_RS14210 (BPUM_2837) comA 2835320..2835961 (-) 642 WP_003213500.1 response regulator transcription factor Regulator
  BPUM_RS14215 (BPUM_2838) comP 2836042..2838348 (-) 2307 WP_012011106.1 ATP-binding protein Regulator
  BPUM_RS14220 (BPUM_2839) comX 2838362..2838541 (-) 180 WP_313960228.1 competence pheromone ComX -
  BPUM_RS14225 (BPUM_2840) - 2838510..2839433 (-) 924 WP_012011108.1 polyprenyl synthetase family protein -
  BPUM_RS14230 (BPUM_2841) degQ 2839585..2839725 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  BPUM_RS14235 (BPUM_2842) - 2840231..2840584 (+) 354 WP_012011109.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24155.54 Da        Isoelectric Point: 4.5204

>NTDB_id=29297 BPUM_RS14210 WP_003213500.1 2835320..2835961(-) (comA) [Bacillus pumilus SAFR-032]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQETDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=29297 BPUM_RS14210 WP_003213500.1 2835320..2835961(-) (comA) [Bacillus pumilus SAFR-032]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATTTTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTCTAGAAACCAACCAACAAGTGAAAATCATC
ATTTATACAGGGTATGAAGTTGATGATTATTTTGAAGAGGCCATTCGGGCTGGATTGCACGGTGCAATTAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGGAGACCGATCACGAGTTGTTAACAGAGCGAGAGTGTCTCATC
CTGAGAGAAGTGGAAAAAGGATACACGAACCAAGAGATTGCTGACGTGCTACATTTGAGCAAACGCTCGATTGAATACAG
CTTGACGTCCATCTTTAATAAGCTGAATGTTGGCTCTCGAACCGAAGCGGTGTTAATTGCAAAATCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.028

100

0.714

Multiple sequence alignment