Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   B7L90_RS12135 Genome accession   NZ_CP029473
Coordinates   2448969..2449658 (+) Length   229 a.a.
NCBI ID   WP_196769287.1    Uniprot ID   -
Organism   Bacillus velezensis strain Hx05     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2443969..2454658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7L90_RS12110 (B7L90_16090) degS 2444253..2445416 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  B7L90_RS12115 (B7L90_16085) degU 2445493..2446182 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  B7L90_RS12120 (B7L90_16080) - 2446280..2447128 (+) 849 WP_003151387.1 DegV family protein -
  B7L90_RS12125 (B7L90_16075) comFA 2447236..2448621 (+) 1386 WP_025853539.1 DEAD/DEAH box helicase Machinery gene
  B7L90_RS12130 (B7L90_16070) - 2448679..2448963 (+) 285 WP_003151389.1 competence protein ComFB -
  B7L90_RS12135 (B7L90_16065) comFC 2448969..2449658 (+) 690 WP_196769287.1 phosphoribosyltransferase family protein Machinery gene
  B7L90_RS12140 (B7L90_16060) - 2449732..2450151 (+) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  B7L90_RS12145 (B7L90_16055) flgM 2450221..2450487 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  B7L90_RS12150 (B7L90_16050) - 2450502..2450984 (+) 483 WP_003151394.1 flagellar protein FlgN -
  B7L90_RS12155 (B7L90_16045) flgK 2451000..2452517 (+) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  B7L90_RS12160 (B7L90_16040) flgL 2452529..2453446 (+) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  B7L90_RS12165 (B7L90_16035) - 2453537..2454106 (+) 570 WP_007407476.1 DUF6470 family protein -
  B7L90_RS12170 (B7L90_16030) fliW 2454136..2454567 (+) 432 WP_003151399.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25265.91 Da        Isoelectric Point: 8.4880

>NTDB_id=292945 B7L90_RS12135 WP_196769287.1 2448969..2449658(+) (comFC) [Bacillus velezensis strain Hx05]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGSVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKSAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=292945 B7L90_RS12135 WP_196769287.1 2448969..2449658(+) (comFC) [Bacillus velezensis strain Hx05]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCTCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAATCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(143-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603

Multiple sequence alignment