Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   B7L90_RS12125 Genome accession   NZ_CP029473
Coordinates   2447236..2448621 (+) Length   461 a.a.
NCBI ID   WP_025853539.1    Uniprot ID   A0A6A8LC10
Organism   Bacillus velezensis strain Hx05     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2442236..2453621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7L90_RS12105 (B7L90_16095) - 2443383..2444030 (-) 648 WP_003151384.1 YigZ family protein -
  B7L90_RS12110 (B7L90_16090) degS 2444253..2445416 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  B7L90_RS12115 (B7L90_16085) degU 2445493..2446182 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  B7L90_RS12120 (B7L90_16080) - 2446280..2447128 (+) 849 WP_003151387.1 DegV family protein -
  B7L90_RS12125 (B7L90_16075) comFA 2447236..2448621 (+) 1386 WP_025853539.1 DEAD/DEAH box helicase Machinery gene
  B7L90_RS12130 (B7L90_16070) - 2448679..2448963 (+) 285 WP_003151389.1 competence protein ComFB -
  B7L90_RS12135 (B7L90_16065) comFC 2448969..2449658 (+) 690 WP_196769287.1 phosphoribosyltransferase family protein Machinery gene
  B7L90_RS12140 (B7L90_16060) - 2449732..2450151 (+) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  B7L90_RS12145 (B7L90_16055) flgM 2450221..2450487 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  B7L90_RS12150 (B7L90_16050) - 2450502..2450984 (+) 483 WP_003151394.1 flagellar protein FlgN -
  B7L90_RS12155 (B7L90_16045) flgK 2451000..2452517 (+) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  B7L90_RS12160 (B7L90_16040) flgL 2452529..2453446 (+) 918 WP_003151396.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52557.14 Da        Isoelectric Point: 10.1848

>NTDB_id=292944 B7L90_RS12125 WP_025853539.1 2447236..2448621(+) (comFA) [Bacillus velezensis strain Hx05]
MAEGASEFSEVRDFFYGRHLLRSEIPFSDHCIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTLLYSWNQAPENRWKPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGITVGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=292944 B7L90_RS12125 WP_025853539.1 2447236..2448621(+) (comFA) [Bacillus velezensis strain Hx05]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATTGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATTATTATATTCTTGGAATCAAGCCCCTGAAAACAG
ATGGAAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGCACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCTAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATTACAGTCGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A8LC10

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.261

99.783

0.631

Multiple sequence alignment