Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   DKG78_RS17150 Genome accession   NZ_CP029466
Coordinates   3471046..3471735 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain HM618     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3466046..3476735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG78_RS17115 (DKG78_17400) - 3466243..3466725 (-) 483 WP_003151394.1 flagellar protein FlgN -
  DKG78_RS17120 (DKG78_17405) flgM 3466740..3467006 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  DKG78_RS17125 (DKG78_17410) - 3467076..3467495 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  DKG78_RS17130 (DKG78_17415) comFC 3467569..3468258 (-) 690 WP_197200179.1 phosphoribosyltransferase family protein Machinery gene
  DKG78_RS17135 (DKG78_17420) - 3468264..3468548 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  DKG78_RS17140 (DKG78_17425) comFA 3468606..3469991 (-) 1386 WP_132105758.1 DEAD/DEAH box helicase Machinery gene
  DKG78_RS17145 (DKG78_17430) - 3470100..3470948 (-) 849 WP_003151387.1 DegV family protein -
  DKG78_RS17150 (DKG78_17435) degU 3471046..3471735 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  DKG78_RS17155 (DKG78_17440) degS 3471812..3472975 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  DKG78_RS17160 (DKG78_17445) - 3473198..3473845 (+) 648 WP_007407485.1 YigZ family protein -
  DKG78_RS17165 (DKG78_17450) - 3473850..3475085 (+) 1236 WP_025285355.1 LCP family protein -
  DKG78_RS17170 (DKG78_17455) - 3475185..3476261 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=292840 DKG78_RS17150 WP_003219701.1 3471046..3471735(-) (degU) [Bacillus amyloliquefaciens strain HM618]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=292840 DKG78_RS17150 WP_003219701.1 3471046..3471735(-) (degU) [Bacillus amyloliquefaciens strain HM618]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment