Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   DKG78_RS17140 Genome accession   NZ_CP029466
Coordinates   3468606..3469991 (-) Length   461 a.a.
NCBI ID   WP_132105758.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HM618     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3463606..3474991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG78_RS17105 (DKG78_17390) flgL 3463781..3464698 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  DKG78_RS17110 (DKG78_17395) flgK 3464710..3466227 (-) 1518 WP_059367707.1 flagellar hook-associated protein FlgK -
  DKG78_RS17115 (DKG78_17400) - 3466243..3466725 (-) 483 WP_003151394.1 flagellar protein FlgN -
  DKG78_RS17120 (DKG78_17405) flgM 3466740..3467006 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  DKG78_RS17125 (DKG78_17410) - 3467076..3467495 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  DKG78_RS17130 (DKG78_17415) comFC 3467569..3468258 (-) 690 WP_197200179.1 phosphoribosyltransferase family protein Machinery gene
  DKG78_RS17135 (DKG78_17420) - 3468264..3468548 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  DKG78_RS17140 (DKG78_17425) comFA 3468606..3469991 (-) 1386 WP_132105758.1 DEAD/DEAH box helicase Machinery gene
  DKG78_RS17145 (DKG78_17430) - 3470100..3470948 (-) 849 WP_003151387.1 DegV family protein -
  DKG78_RS17150 (DKG78_17435) degU 3471046..3471735 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  DKG78_RS17155 (DKG78_17440) degS 3471812..3472975 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  DKG78_RS17160 (DKG78_17445) - 3473198..3473845 (+) 648 WP_007407485.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52687.99 Da        Isoelectric Point: 10.2276

>NTDB_id=292839 DKG78_RS17140 WP_132105758.1 3468606..3469991(-) (comFA) [Bacillus amyloliquefaciens strain HM618]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFTEKEYITDEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVVMGRADELTSLYSWNQAHENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEANLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNVRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=292839 DKG78_RS17140 WP_132105758.1 3468606..3469991(-) (comFA) [Bacillus amyloliquefaciens strain HM618]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTACGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAAGCGTTTTACAGAAAAAGAATATATAACGGACGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCGTGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCATGAAAACAG
CTGGGAACCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCTCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCAATTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGAAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACATGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAATGTAAGGGCAGAAGGCGTTCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

61.957

99.783

0.618

Multiple sequence alignment