Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   DKG78_RS15185 Genome accession   NZ_CP029466
Coordinates   3081105..3081749 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus amyloliquefaciens strain HM618     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3076105..3086749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG78_RS15150 (DKG78_15375) - 3077290..3077721 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  DKG78_RS15155 (DKG78_15380) - 3077721..3078062 (+) 342 WP_043020758.1 Na(+)/H(+) antiporter subunit C -
  DKG78_RS15160 (DKG78_15385) - 3078055..3079536 (+) 1482 WP_025285189.1 Na+/H+ antiporter subunit D -
  DKG78_RS15165 (DKG78_15390) - 3079542..3080018 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  DKG78_RS15170 (DKG78_15395) - 3080018..3080302 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  DKG78_RS15175 (DKG78_15400) mnhG 3080286..3080660 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  DKG78_RS15180 (DKG78_15405) - 3080700..3081083 (-) 384 WP_012118312.1 hotdog fold thioesterase -
  DKG78_RS15185 (DKG78_15410) comA 3081105..3081749 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  DKG78_RS15190 (DKG78_15415) comP 3081830..3084136 (-) 2307 WP_192452678.1 sensor histidine kinase Regulator
  DKG78_RS15195 (DKG78_15420) comX 3084155..3084331 (-) 177 WP_015240484.1 competence pheromone ComX -
  DKG78_RS15200 (DKG78_15425) - 3084346..3085221 (-) 876 WP_025285191.1 polyprenyl synthetase family protein -
  DKG78_RS15205 (DKG78_15430) degQ 3085373..3085513 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  DKG78_RS15210 (DKG78_15440) - 3085979..3086320 (+) 342 WP_015418107.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=292833 DKG78_RS15185 WP_003152052.1 3081105..3081749(-) (comA) [Bacillus amyloliquefaciens strain HM618]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=292833 DKG78_RS15185 WP_003152052.1 3081105..3081749(-) (comA) [Bacillus amyloliquefaciens strain HM618]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGACAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCAATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment