Detailed information NTG0292807

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: DKG78_RS08755
• Genome accession: NZ_CP029466
• Coordinates: 1708838..1709617 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus amyloliquefaciens strain HM618
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1703838..1714617

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DKG78_RS08735 (DKG78_08880)	trmFO	1704525..1705832 (+)	1308	WP_012117550.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
DKG78_RS08740 (DKG78_08885)	xerC	1705902..1706819 (+)	918	WP_032871470.1	tyrosine recombinase XerC	-
DKG78_RS08745 (DKG78_08890)	hslV	1706835..1707380 (+)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
DKG78_RS08750 (DKG78_08895)	hslU	1707397..1708800 (+)	1404	WP_007409775.1	HslU--HslV peptidase ATPase subunit	-
DKG78_RS08755 (DKG78_08900)	codY	1708838..1709617 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
DKG78_RS08760 (DKG78_08905)	flgB	1709971..1710360 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
DKG78_RS08765 (DKG78_08910)	flgC	1710360..1710812 (+)	453	WP_003154259.1	flagellar basal body rod protein FlgC	-
DKG78_RS08770 (DKG78_08915)	fliE	1710823..1711143 (+)	321	WP_052827419.1	flagellar hook-basal body complex protein FliE	-
DKG78_RS08775 (DKG78_08920)	fliF	1711186..1712796 (+)	1611	WP_012117551.1	flagellar basal-body MS-ring/collar protein FliF	-
DKG78_RS08780 (DKG78_08925)	fliG	1712809..1713825 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
DKG78_RS08785 (DKG78_08930)	fliH	1713818..1714573 (+)	756	WP_033574573.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=292807 DKG78_RS08755 WP_003154263.1 1708838..1709617(+) (codY) [Bacillus amyloliquefaciens strain HM618]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=292807 DKG78_RS08755 WP_003154263.1 1708838..1709617(+) (codY) [Bacillus amyloliquefaciens strain HM618]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTTTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATCGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471