Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   DKG78_RS07900 Genome accession   NZ_CP029466
Coordinates   1509046..1509330 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HM618     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1504046..1514330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG78_RS07880 (DKG78_08000) - 1505289..1506197 (+) 909 WP_192452975.1 ketopantoate reductase family protein -
  DKG78_RS07885 (DKG78_08005) - 1506229..1507461 (-) 1233 WP_007409644.1 aminopeptidase -
  DKG78_RS07890 (DKG78_08010) - 1507562..1507696 (-) 135 WP_003154559.1 protein YkpC -
  DKG78_RS07895 (DKG78_08015) mreBH 1507768..1508775 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  DKG78_RS07900 (DKG78_08025) abrB 1509046..1509330 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  DKG78_RS07905 (DKG78_08030) - 1509503..1510807 (+) 1305 WP_007409646.1 ATP-binding protein -
  DKG78_RS07910 (DKG78_08035) - 1510809..1511636 (+) 828 WP_076424051.1 gamma-glutamylcyclotransferase -
  DKG78_RS07915 (DKG78_08040) ktrC 1511677..1512342 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  DKG78_RS07920 (DKG78_08045) ade 1512490..1514223 (+) 1734 WP_012117460.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=292805 DKG78_RS07900 WP_003154557.1 1509046..1509330(+) (abrB) [Bacillus amyloliquefaciens strain HM618]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=292805 DKG78_RS07900 WP_003154557.1 1509046..1509330(+) (abrB) [Bacillus amyloliquefaciens strain HM618]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment