Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   DKG78_RS07790 Genome accession   NZ_CP029466
Coordinates   1488548..1489144 (+) Length   198 a.a.
NCBI ID   WP_192452971.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HM618     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1483548..1494144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG78_RS07760 (DKG78_07880) - 1483760..1484215 (+) 456 WP_132106133.1 flavodoxin -
  DKG78_RS07765 (DKG78_07885) dapD 1484297..1485007 (+) 711 WP_012117443.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  DKG78_RS07770 (DKG78_07890) - 1485078..1486202 (+) 1125 WP_046702332.1 N-acetyldiaminopimelate deacetylase -
  DKG78_RS07775 (DKG78_07895) - 1486263..1486508 (+) 246 WP_003154596.1 YkuS family protein -
  DKG78_RS07780 (DKG78_07900) - 1486542..1487348 (-) 807 WP_076424043.1 mechanosensitive ion channel family protein -
  DKG78_RS07785 (DKG78_07905) - 1487637..1488095 (+) 459 WP_038463805.1 TlpA disulfide reductase family protein -
  DKG78_RS07790 (DKG78_07910) rok 1488548..1489144 (+) 597 WP_192452971.1 transcriptional regulator Rok Regulator
  DKG78_RS07795 (DKG78_07915) - 1489165..1490157 (-) 993 WP_012117448.1 hypothetical protein -
  DKG78_RS07800 (DKG78_07920) - 1490303..1490905 (+) 603 WP_052827374.1 molybdenum cofactor guanylyltransferase -
  DKG78_RS07805 (DKG78_07925) - 1490957..1491976 (+) 1020 WP_052827375.1 molybdopterin-synthase adenylyltransferase MoeB -
  DKG78_RS07810 (DKG78_07930) glp 1491994..1493286 (+) 1293 WP_192452972.1 gephyrin-like molybdotransferase Glp -
  DKG78_RS07815 (DKG78_07935) mobB 1493247..1493768 (+) 522 WP_007409631.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22553.58 Da        Isoelectric Point: 9.4832

>NTDB_id=292804 DKG78_RS07790 WP_192452971.1 1488548..1489144(+) (rok) [Bacillus amyloliquefaciens strain HM618]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYEKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
AQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=292804 DKG78_RS07790 WP_192452971.1 1488548..1489144(+) (rok) [Bacillus amyloliquefaciens strain HM618]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGAAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCTGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
GCACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATTAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

85.567

97.98

0.838

Multiple sequence alignment