Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   DKG78_RS06305 Genome accession   NZ_CP029466
Coordinates   1217677..1217868 (+) Length   63 a.a.
NCBI ID   WP_003155061.1    Uniprot ID   A0AAE2TKK9
Organism   Bacillus amyloliquefaciens strain HM618     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1212677..1222868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG78_RS06275 (DKG78_06380) argF 1213530..1214501 (+) 972 WP_012117275.1 ornithine carbamoyltransferase -
  DKG78_RS06280 (DKG78_06385) - 1214577..1214756 (+) 180 WP_003155070.1 YjzC family protein -
  DKG78_RS06285 (DKG78_06390) - 1214792..1214977 (-) 186 WP_007409129.1 YjzD family protein -
  DKG78_RS06290 (DKG78_06400) - 1215238..1215972 (+) 735 WP_059367238.1 hypothetical protein -
  DKG78_RS06295 (DKG78_06405) - 1216055..1216621 (+) 567 WP_007409126.1 hypothetical protein -
  DKG78_RS06300 (DKG78_06410) med 1216711..1217664 (+) 954 WP_007409125.1 BMP family ABC transporter substrate-binding protein Regulator
  DKG78_RS06305 (DKG78_06415) comZ 1217677..1217868 (+) 192 WP_003155061.1 ComZ family protein Regulator
  DKG78_RS06310 (DKG78_06420) - 1217897..1218115 (-) 219 WP_007409123.1 hypothetical protein -
  DKG78_RS06315 (DKG78_06425) - 1218282..1219220 (+) 939 WP_007409122.1 beta-ketoacyl-ACP synthase III -
  DKG78_RS06320 (DKG78_06430) fabF 1219243..1220481 (+) 1239 WP_003155056.1 beta-ketoacyl-ACP synthase II -
  DKG78_RS06325 (DKG78_06435) - 1220565..1221350 (+) 786 WP_012117278.1 DUF2268 domain-containing protein -
  DKG78_RS06330 (DKG78_06440) - 1221524..1222510 (+) 987 WP_132106277.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 63 a.a.        Molecular weight: 7203.33 Da        Isoelectric Point: 4.2259

>NTDB_id=292796 DKG78_RS06305 WP_003155061.1 1217677..1217868(+) (comZ) [Bacillus amyloliquefaciens strain HM618]
MQHEKSLEFMQIAMKYLPEAKAELEKSGIDLSMEMIQPFMDLFTSVMAEAYELGRSDAGELNK

Nucleotide


Download         Length: 192 bp        

>NTDB_id=292796 DKG78_RS06305 WP_003155061.1 1217677..1217868(+) (comZ) [Bacillus amyloliquefaciens strain HM618]
ATGCAGCATGAAAAGTCTCTTGAATTTATGCAGATCGCGATGAAATACCTGCCGGAAGCTAAGGCAGAGCTTGAGAAATC
CGGCATAGATCTGTCTATGGAAATGATTCAGCCGTTTATGGACCTGTTTACATCGGTCATGGCGGAAGCGTATGAGCTTG
GCAGATCTGATGCCGGGGAGCTGAATAAATAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

86.207

92.063

0.794

Multiple sequence alignment