Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   DKG78_RS02225 Genome accession   NZ_CP029466
Coordinates   406832..407230 (-) Length   132 a.a.
NCBI ID   WP_014416873.1    Uniprot ID   I2C179
Organism   Bacillus amyloliquefaciens strain HM618     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 401832..412230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG78_RS02200 (DKG78_02230) - 402003..403205 (+) 1203 WP_069007411.1 GTP-binding protein -
  DKG78_RS02205 (DKG78_02235) - 403270..404406 (+) 1137 WP_025284207.1 zinc-dependent alcohol dehydrogenase -
  DKG78_RS02210 (DKG78_02240) - 404421..404855 (+) 435 WP_007409358.1 RDD family protein -
  DKG78_RS02215 (DKG78_02245) - 404973..405251 (+) 279 WP_372691166.1 YckD family protein -
  DKG78_RS02220 (DKG78_02250) - 405355..406791 (+) 1437 WP_076425807.1 glycoside hydrolase family 1 protein -
  DKG78_RS02225 (DKG78_02255) nin/comJ 406832..407230 (-) 399 WP_014416873.1 competence protein ComJ Regulator
  DKG78_RS02230 (DKG78_02260) nucA/comI 407251..407688 (-) 438 WP_132106741.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  DKG78_RS02235 (DKG78_02265) hxlB 408047..408604 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  DKG78_RS02240 (DKG78_02270) hxlA 408601..409236 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  DKG78_RS02245 (DKG78_02275) - 409468..409830 (+) 363 WP_012116770.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14893.89 Da        Isoelectric Point: 4.7846

>NTDB_id=292781 DKG78_RS02225 WP_014416873.1 406832..407230(-) (nin/comJ) [Bacillus amyloliquefaciens strain HM618]
MIKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLSFNIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=292781 DKG78_RS02225 WP_014416873.1 406832..407230(-) (nin/comJ) [Bacillus amyloliquefaciens strain HM618]
TTGATTAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTCTTTTAATATTCCTAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C179

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

76.515

100

0.765

Multiple sequence alignment