Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   DKG76_RS19890 Genome accession   NZ_CP029465
Coordinates   3962077..3962196 (+) Length   39 a.a.
NCBI ID   WP_003222023.1    Uniprot ID   A0A9Q4EZF5
Organism   Bacillus inaquosorum strain KCTC 13429     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3957077..3967196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG76_RS19865 (DKG76_19865) - 3957239..3957940 (+) 702 WP_003235887.1 bacteriocin biosynthesis protein AlbG -
  DKG76_RS19870 (DKG76_19870) - 3957947..3959323 (-) 1377 WP_003235889.1 YncE family protein -
  DKG76_RS19875 (DKG76_19875) - 3959363..3960718 (-) 1356 WP_003235891.1 YncE family protein -
  DKG76_RS19885 (DKG76_19885) rapF 3960948..3962093 (+) 1146 WP_003235896.1 response regulator aspartate phosphatase RapF Regulator
  DKG76_RS19890 (DKG76_19890) phrF 3962077..3962196 (+) 120 WP_003222023.1 phosphatase RapF inhibitor PhrF Regulator
  DKG76_RS19895 (DKG76_19895) - 3962450..3962929 (+) 480 WP_003235899.1 hypothetical protein -
  DKG76_RS22380 - 3963078..3963356 (+) 279 WP_249033907.1 hypothetical protein -
  DKG76_RS22385 - 3963515..3963865 (+) 351 WP_249033908.1 hypothetical protein -
  DKG76_RS19905 (DKG76_19905) - 3963852..3964526 (+) 675 WP_032731687.1 hypothetical protein -
  DKG76_RS19910 (DKG76_19910) - 3964536..3965333 (+) 798 WP_003235906.1 hypothetical protein -
  DKG76_RS19915 (DKG76_19915) - 3965336..3965983 (+) 648 WP_003235909.1 ABC transporter ATP-binding protein -
  DKG76_RS19920 (DKG76_19920) - 3965976..3966536 (+) 561 WP_003235911.1 hypothetical protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4226.12 Da        Isoelectric Point: 10.4997

>NTDB_id=292770 DKG76_RS19890 WP_003222023.1 3962077..3962196(+) (phrF) [Bacillus inaquosorum strain KCTC 13429]
MKLKSKLLLSCLALSTVFIATNIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=292770 DKG76_RS19890 WP_003222023.1 3962077..3962196(+) (phrF) [Bacillus inaquosorum strain KCTC 13429]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCCCTAAGCACTGTTTTCATCGCAACGAATATTGCAAACGCACC
TACACACCAAATTGAAGTTGCACAGCGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

92.593

69.231

0.641
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment