Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   DKG76_RS08970 Genome accession   NZ_CP029465
Coordinates   1798360..1799253 (+) Length   297 a.a.
NCBI ID   WP_032732055.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain KCTC 13429     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1793360..1804253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG76_RS08950 (DKG76_08950) - 1794030..1795760 (+) 1731 WP_003238573.1 hypothetical protein -
  DKG76_RS08955 (DKG76_08955) - 1795757..1796038 (+) 282 WP_003238571.1 FlhB-like flagellar biosynthesis protein -
  DKG76_RS08960 (DKG76_08960) sucC 1796212..1797369 (+) 1158 WP_003238568.1 ADP-forming succinate--CoA ligase subunit beta -
  DKG76_RS08965 (DKG76_08965) sucD 1797397..1798299 (+) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  DKG76_RS08970 (DKG76_08970) dprA 1798360..1799253 (+) 894 WP_032732055.1 DNA-processing protein DprA Machinery gene
  DKG76_RS08975 (DKG76_08975) topA 1799438..1801513 (+) 2076 WP_003238559.1 type I DNA topoisomerase -
  DKG76_RS08980 (DKG76_08980) trmFO 1801589..1802896 (+) 1308 WP_003238558.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  DKG76_RS08985 (DKG76_08985) xerC 1802964..1803878 (+) 915 WP_003238557.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32899.26 Da        Isoelectric Point: 9.8035

>NTDB_id=292727 DKG76_RS08970 WP_032732055.1 1798360..1799253(+) (dprA) [Bacillus inaquosorum strain KCTC 13429]
MDQAAACLMICRINQLLSPSLLLKWWKADPSMSLTSSVFETVTRGKVKAAALKNKIEEYYPKLQRVLAAYHEQGINIIPI
SSKQYPFWLKTIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGIQVVNHLTKELCRKDWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPATKPQKWHFPMRNRIISGLSEGIIVVQGKEKSGSLITA
DQAMEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSADDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=292727 DKG76_RS08970 WP_032732055.1 1798360..1799253(+) (dprA) [Bacillus inaquosorum strain KCTC 13429]
TTGGATCAGGCCGCTGCCTGTTTAATGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCTGATCCGTCTATGTCGCTGACATCATCCGTGTTCGAAACTGTTACTCGCGGTAAAGTAAAGGCAGCTGCATTAAAAA
ACAAAATAGAAGAATATTACCCAAAACTTCAGCGTGTACTTGCTGCTTACCATGAGCAAGGCATTAACATCATCCCGATT
TCTTCAAAGCAATATCCTTTCTGGCTGAAAACCATTTATGATCCCCCCGCTGTCCTGTTTGCAAAGGGTGATATGACCCT
TCTTTCTAAAGGGAGGAAAATTGGAATTGTAGGTACAAGAAATCCAACAGCGTATGGTATACAAGTTGTCAATCATCTTA
CAAAAGAGCTTTGCCGTAAAGATTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATCGGCGTCATTGCAGGCGGATTTCAGCACATTTATCCCCGGGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTTCTGTCAGAGCATCCACCAGCAACCAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATCATCAGCGGATTAAGTGAAGGCATTATTGTCGTGCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCA
GACCAAGCAATGGAACAAGGGAGAGAAGTTTTTGCCGTACCCGGTTCATTATTTGATCCTTACGCCGGAGGTCCTATAAA
ACTAATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGATGATATTTTCGAGGAGCTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

92.256

100

0.923
  dprA Lactococcus lactis subsp. cremoris KW2

41.729

89.562

0.374
  dprA Legionella pneumophila strain ERS1305867

37.162

99.663

0.37

Multiple sequence alignment