Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DKG76_RS00580 Genome accession   NZ_CP029465
Coordinates   105678..107054 (+) Length   458 a.a.
NCBI ID   WP_003242044.1    Uniprot ID   A0A9W5LEJ7
Organism   Bacillus inaquosorum strain KCTC 13429     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 100678..112054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG76_RS00560 (DKG76_00560) ctsR 101032..101496 (+) 465 WP_003242054.1 transcriptional regulator CtsR -
  DKG76_RS00565 (DKG76_00565) mcsA 101510..102067 (+) 558 WP_032732366.1 protein-arginine kinase activator protein McsA -
  DKG76_RS00570 (DKG76_00570) - 102067..103158 (+) 1092 WP_003242049.1 protein arginine kinase -
  DKG76_RS00575 (DKG76_00575) clpC 103155..105587 (+) 2433 WP_003242047.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  DKG76_RS00580 (DKG76_00580) radA 105678..107054 (+) 1377 WP_003242044.1 DNA repair protein RadA Machinery gene
  DKG76_RS00585 (DKG76_00585) disA 107058..108140 (+) 1083 WP_003242042.1 DNA integrity scanning diadenylate cyclase DisA -
  DKG76_RS00590 (DKG76_00590) - 108255..109355 (+) 1101 WP_003242040.1 PIN/TRAM domain-containing protein -
  DKG76_RS00595 (DKG76_00595) ispD 109370..110068 (+) 699 WP_003242038.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  DKG76_RS00600 (DKG76_00600) ispF 110061..110537 (+) 477 WP_003225745.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49496.97 Da        Isoelectric Point: 7.9805

>NTDB_id=292700 DKG76_RS00580 WP_003242044.1 105678..107054(+) (radA) [Bacillus inaquosorum strain KCTC 13429]
MAKTKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPANRRAAFSHSVQTVQKPSPITSIETSEEPRVKTQLGEF
NRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQLSDSSNSVLYISGEESVKQTKLRADRLGINNPSLHVLSETDMEYIS
SAIQEMNPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGSAGSSITASMEGTRPILVEIQALISPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAISIASSFRDTPPNPADCFIGEVGLT
GEVRRVSRIEQRVKEAAKLGFKRMIIPAANLDGWTKPKGIEVIGVANVAEALRTSLGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=292700 DKG76_RS00580 WP_003242044.1 105678..107054(+) (radA) [Bacillus inaquosorum strain KCTC 13429]
ATGGCTAAAACAAAATCGAAATTCATCTGCCAATCCTGCGGCTACGAGTCTCCAAAATGGATGGGGAAATGTCCGGGATG
CGGTGCTTGGAATACAATGGTGGAAGAAATGATTAAAAAAGCACCTGCCAATCGGAGAGCGGCTTTTTCTCATTCTGTTC
AAACCGTACAGAAACCTTCACCTATTACATCAATCGAAACATCAGAAGAACCCCGGGTTAAAACCCAGCTTGGCGAATTT
AACAGAGTGCTCGGCGGGGGCGTCGTTAAAGGTTCACTCGTTCTAATCGGCGGCGATCCCGGTATCGGAAAGTCAACGTT
ATTACTGCAGGTTTCCGCTCAATTATCAGATTCATCGAACAGTGTGCTGTACATTTCGGGAGAAGAATCGGTCAAACAAA
CGAAACTGAGAGCAGACCGTCTCGGCATAAATAATCCGTCGCTGCATGTTTTATCTGAAACCGATATGGAGTATATTTCG
TCTGCTATACAAGAGATGAATCCAGCGTTTGTCGTTGTTGACTCTATTCAAACGGTTTACCAAAGCGATATCACATCAGC
TCCCGGCAGTGTGTCACAGGTCAGGGAATGTACGGCTGAGCTGATGAAAATTGCAAAAACAAAAGGCATTCCGATTTTTA
TCGTAGGGCACGTGACGAAAGAAGGGTCCATCGCAGGGCCTAGACTGCTGGAGCATATGGTTGACACTGTTTTATATTTT
GAAGGAGAACGTCACCATACTTTCCGTATTTTGCGGGCTGTAAAAAACCGTTTTGGATCTACAAACGAAATGGGCATTTT
CGAAATGCGCGAAGAGGGACTCACTGAGGTTTTGAATCCTTCAGAAATTTTCTTAGAAGAACGCTCGGCGGGATCCGCAG
GCTCGAGCATAACTGCTTCTATGGAAGGCACAAGACCGATTCTCGTTGAAATCCAGGCGCTCATCTCGCCAACAAGCTTT
GGCAATCCGCGGCGTATGGCAACGGGAATAGACCATAACAGGGTTTCACTGTTAATGGCTGTGTTAGAAAAAAGAGTTGG
GCTGCTGCTGCAAAATCAGGATGCTTATTTGAAAGTGGCCGGCGGCGTTAAGCTTGATGAACCGGCAATTGATCTTGCCA
TTGCGATCAGTATTGCGTCAAGCTTTAGAGACACACCTCCAAATCCTGCAGATTGTTTTATAGGAGAAGTGGGATTAACC
GGAGAAGTCCGGCGGGTTTCAAGAATTGAACAGCGTGTGAAAGAAGCGGCTAAGCTTGGTTTTAAACGCATGATCATACC
CGCGGCAAATCTGGATGGATGGACAAAACCAAAAGGGATTGAGGTTATCGGAGTAGCAAATGTTGCAGAGGCGCTTCGTA
CTTCATTAGGAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(72-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

99.345

100

0.993
  radA Streptococcus pneumoniae Rx1

63.355

98.908

0.627
  radA Streptococcus pneumoniae D39

63.355

98.908

0.627
  radA Streptococcus pneumoniae R6

63.355

98.908

0.627
  radA Streptococcus pneumoniae TIGR4

63.355

98.908

0.627
  radA Streptococcus mitis NCTC 12261

63.355

98.908

0.627
  radA Streptococcus mitis SK321

63.135

98.908

0.624

Multiple sequence alignment