Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DF184_RS10080 Genome accession   NZ_CP029398
Coordinates   2042752..2044167 (-) Length   471 a.a.
NCBI ID   WP_109372070.1    Uniprot ID   -
Organism   Streptococcus suis strain HN105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2029874..2045067 2042752..2044167 within 0


Gene organization within MGE regions


Location: 2029874..2045067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DF184_RS10050 (DF184_10050) - 2029874..2030533 (-) 660 WP_109372068.1 hypothetical protein -
  DF184_RS10055 (DF184_10055) - 2030538..2030984 (-) 447 WP_024407334.1 LytTR family DNA-binding domain-containing protein -
  DF184_RS11305 - 2031124..2031204 (-) 81 WP_238599190.1 hypothetical protein -
  DF184_RS11310 - 2031174..2031317 (+) 144 WP_275425322.1 hypothetical protein -
  DF184_RS10060 (DF184_10060) - 2031403..2038719 (-) 7317 Protein_1914 DUF445 family protein -
  DF184_RS11315 - 2038616..2038930 (+) 315 WP_238599179.1 hypothetical protein -
  DF184_RS10065 (DF184_10065) - 2039611..2040831 (-) 1221 WP_105120286.1 glycosyltransferase family 8 protein -
  DF184_RS10070 (DF184_10070) - 2041178..2041936 (-) 759 WP_002939965.1 TIGR00266 family protein -
  DF184_RS10075 (DF184_10075) - 2042160..2042654 (-) 495 WP_105120287.1 carbonic anhydrase -
  DF184_RS10080 (DF184_10080) radA 2042752..2044167 (-) 1416 WP_109372070.1 DNA repair protein RadA Machinery gene
  DF184_RS10085 (DF184_10085) - 2044142..2044615 (-) 474 WP_105106188.1 hypothetical protein -
  DF184_RS10090 (DF184_10090) - 2044624..2045067 (-) 444 WP_109372072.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 51802.63 Da        Isoelectric Point: 7.6569

>NTDB_id=292297 DF184_RS10080 WP_109372070.1 2042752..2044167(-) (radA) [Streptococcus suis strain HN105]
MFYVKRRVRVAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTK
TNMEEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETN
MQSIRTEIEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVD
TVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALV
TPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIG
EIGLTGEIRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFNLMKSFGSDS

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=292297 DF184_RS10080 WP_109372070.1 2042752..2044167(-) (radA) [Streptococcus suis strain HN105]
GTGTTTTACGTAAAAAGGAGAGTTAGAGTGGCTAAGAAAAAAACAACCTTTGTCTGTCAATCTTGCGAGTACCACTCCCC
CAAGTATCTGGGCCGTTGCCCCAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTTGCAGAAGTCAAGAACG
AGCGGGTTAGCCTGACAGGTGAGAAGACCCGACCCATGAAGCTCAATGAAGTTTCCTCCATCCAAGTGGCCCGCACCAAG
ACCAACATGGAAGAGTTCAACCGGGTCCTCGGTGGCGGTGTGGTGCCAGGCAGTTTGGTCCTGATTGGAGGCGATCCAGG
AATCGGGAAATCCACCCTGCTTTTACAGGTATCTACCCAGCTTTCTACTATTGGCACGGTCCTCTATGTGTCGGGGGAAG
AGTCTGCCCAGCAGATTAAGTTGCGGGCGGAGCGTCTGGGCGACATCGATAGCGAGTTCTATCTCTATGCGGAGACCAAT
ATGCAGAGCATTCGGACCGAGATTGAGAAGATAAAACCAGATTTCCTGATTATCGACTCTATCCAGACCATTATGAGCCC
TGACATCTCCAGCGTGCAAGGCTCTGTCAGTCAGGTCCGTGAAGTAACCAATGAACTCATGCAGATTGCCAAGACCAACA
ACATCGCAACCTTTATCGTCGGCCACATGACCAAGGAGGGAACCCTGGCTGGACCGCGGACCCTGGAGCACATGGTGGAC
ACCGTTCTCTATTTTGAGGGCGAGCGACAGCACACCTTCCGTATCTTGCGGGCGGTCAAAAACCGCTTTGGCTCCACCAA
CGAAATCGGCATTTTTGAAATGCAGTCGCAGGGCTTAGTCGAAGTCCTCAATCCTAGTGAAGTCTTTCTGGAGGAGCGTT
TGGACGGGGCGACTGGCTCTGCTATTGTCGTGACCATGGAGGGCACCCGCCCTATCCTTGCAGAAGTGCAGGCCCTGGTG
ACGCCGACCATGTTTGGCAATGCCAAGCGGACCACGACAGGCTTGGACTTCAACCGTGCCAGCTTGATTATGGCGGTTTT
GGAAAAACGGGCAGGCCTGCTCCTCCAAAACCAAGATGCCTACCTCAAGTCGGCAGGTGGTGTCAAACTGGATGAGCCAG
CTATTGACCTGGCGGTCGCAGTTGCCCTTGCCTCCAGTTACAAGGATAAGCCTACCAACCCACAAGAGTGCTTTATAGGC
GAAATCGGTCTGACAGGTGAAATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCTAAATTGGGCTTTAC
CAAGGTCTATGCCCCCAAAAATTCTCTGACCGGTATCAAGGTGCCCAAGGAAATCACCGTTATCGGCGTGACCACCATTG
GCGAAGTCTTGCAGAAAGTATTCAACTTGATGAAATCATTCGGGAGTGACAGTTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(71-227)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(17-44)

Subunit ChlI of Mg-chelatase (ChlI)

(370-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.372

95.966

0.877
  radA Streptococcus pneumoniae Rx1

91.15

95.966

0.875
  radA Streptococcus pneumoniae D39

91.15

95.966

0.875
  radA Streptococcus pneumoniae R6

91.15

95.966

0.875
  radA Streptococcus pneumoniae TIGR4

91.15

95.966

0.875
  radA Streptococcus mitis SK321

90.929

95.966

0.873
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

96.178

0.603

Multiple sequence alignment